UHGV-0175810

Genome information

Genome length 31,656 bps

CDS count 45

Completeness 73.30% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175810
vOTU ID	vOTU-028849
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589889
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.09
Jumbo phage	No

Genome content
Genome length	31,656 bps
GC content	54.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	89.07%
Average CDS length	630.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175810_1	eggNOG-mapper	1203606.HMPREF1526_00240	NA	NA
UHGV-0175810_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175810_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175810_2	UniRef90	UniRef90_A0A6N8H4T4	Single-stranded DNA-binding protein	NA
UHGV-0175810_2	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0175810_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175810_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175810_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175810_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175810_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175810_3	PHROG	phrog_7566	NA	unknown function
UHGV-0175810_3	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0175810_4	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175810_4	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0175810_4	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0175810_4	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0175810_5	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175810_5	UniRef90	UniRef90_UPI0009E55993	NA	NA
UHGV-0175810_5	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0175810_5	Pfam	PF06378	NA	DUF1071
UHGV-0175810_5	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0175810_8	PHROG	phrog_5070	NA	unknown function
UHGV-0175810_8	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0175810_8	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0175810_10	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0175810_10	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0175810_12	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0175810_12	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0175810_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175810_13	UniRef90	UniRef90_UPI00189845EC	helix-turn-helix domain-containing protein	NA
UHGV-0175810_13	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0175810_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0175810_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175810_13	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0175810_17	eggNOG-mapper	861454.HMPREF9099_00997	domain, Protein	NA
UHGV-0175810_17	COG	COG5492	NA	NA
UHGV-0175810_17	Structural annotation	PF15729	NA	NA
UHGV-0175810_18	KOfam	K14059	int; integrase	NA
UHGV-0175810_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0175810_18	UniRef90	UniRef90_A0A542ARL8	Phage integrase family protein	NA
UHGV-0175810_18	eggNOG-mapper	1304866.K413DRAFT_1893	Belongs to the 'phage' integrase family	NA
UHGV-0175810_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175810_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175810_18	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0175810_21	eggNOG-mapper	1163671.JAGI01000002_gene1246	NA	NA
UHGV-0175810_22	Structural annotation	PF06531	NA	NA
UHGV-0175810_23	Structural annotation	PF15998	NA	NA
UHGV-0175810_24	PHROG	phrog_15863	NA	unknown function
UHGV-0175810_24	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-0175810_24	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0175810_24	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0175810_25	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0175810_28	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0175810_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0175810_28	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0175810_28	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0175810_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175810_28	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0175810_31	PHROG	phrog_35275	NA	unknown function
UHGV-0175810_31	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0175810_32	PHROG	phrog_371	major head protein	head and packaging
UHGV-0175810_32	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0175810_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175810_34	PHROG	phrog_156	portal protein	head and packaging
UHGV-0175810_34	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0175810_34	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0175810_35	PHROG	phrog_13046	NA	unknown function
UHGV-0175810_35	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0175810_35	Structural annotation	PF20387	NA	NA
UHGV-0175810_36	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0175810_36	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0175810_36	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0175810_37	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0175810_37	PHROG	phrog_819	tail protein	tail
UHGV-0175810_37	UniRef90	UniRef90_UPI00164C9345	collagen-like protein	NA
UHGV-0175810_37	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0175810_37	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0175810_38	PHROG	phrog_5717	tail protein	tail
UHGV-0175810_38	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0175810_38	COG	COG4675	Phage tail collar domain	NA
UHGV-0175810_38	Structural annotation	COG4675	NA	NA
UHGV-0175810_39	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0175810_39	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0175810_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0175810_41	KOfam	K07273	acm; lysozyme	NA
UHGV-0175810_41	PHROG	phrog_291	endolysin	lysis
UHGV-0175810_41	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0175810_41	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0175810_41	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0175810_41	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175810_41	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0175810_41	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0175810_42	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0175810_42	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0175810_43	PHROG	phrog_13256	NA	unknown function
UHGV-0175810_43	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA