UHGV-0175819

Genome information

Genome length 35,091 bps

CDS count 59

Completeness 99.57% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175819
vOTU ID	vOTU-010940
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589886
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.57% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.57
Jumbo phage	No

Genome content
Genome length	35,091 bps
GC content	52.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.91%
Average CDS length	545.44 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175819_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0175819_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175819_1	UniRef90	UniRef90_UPI0005937579	HNH endonuclease	NA
UHGV-0175819_1	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0175819_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0175819_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0175819_3	Structural annotation	PF04545	NA	NA
UHGV-0175819_4	PHROG	phrog_14105	NA	unknown function
UHGV-0175819_4	UniRef90	UniRef90_A0A239CRY1	Pentapeptide repeat-containing protein	NA
UHGV-0175819_4	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0175819_4	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0175819_4	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0175819_5	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0175819_5	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175819_5	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0175819_5	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0175819_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175819_5	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175819_5	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0175819_7	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0175819_7	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175819_7	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0175819_7	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0175819_7	Pfam	PF13614	AAA domain	AAA_31
UHGV-0175819_7	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0175819_7	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0175819_8	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0175819_8	Pfam	PF19481	NA	DUF6017
UHGV-0175819_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0175819_8	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0175819_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175819_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175819_9	UniRef90	UniRef90_A0A2A7ALU9	Single-stranded DNA-binding protein	NA
UHGV-0175819_9	eggNOG-mapper	411483.FAEPRAA2165_01975	Single-stranded DNA-binding protein	NA
UHGV-0175819_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175819_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175819_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175819_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175819_9	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0175819_10	PHROG	phrog_7566	NA	unknown function
UHGV-0175819_10	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0175819_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175819_11	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0175819_11	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0175819_12	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0175819_12	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0175819_12	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0175819_18	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0175819_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175819_19	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0175819_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175819_20	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0175819_20	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0175819_20	UniRef90	UniRef90_A0A839K0X1	3'-5' exoribonuclease	NA
UHGV-0175819_20	eggNOG-mapper	1123288.SOV_2c03960	DNA polymerase III	NA
UHGV-0175819_20	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0175819_20	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0175819_20	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0175819_20	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0175819_20	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0175819_20	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0175819_26	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0175819_26	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0175819_26	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0175819_26	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175819_27	KOfam	K14059	int; integrase	NA
UHGV-0175819_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0175819_27	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0175819_27	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0175819_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175819_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175819_27	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0175819_28	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0175819_29	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0175819_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0175819_30	PHROG	phrog_16490	NA	unknown function
UHGV-0175819_30	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0175819_34	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0175819_34	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0175819_38	PHROG	phrog_15303	NA	unknown function
UHGV-0175819_40	KOfam	K07273	acm; lysozyme	NA
UHGV-0175819_40	PHROG	phrog_291	endolysin	lysis
UHGV-0175819_40	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0175819_40	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0175819_40	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0175819_40	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0175819_40	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0175819_41	Structural annotation	NF040910	NA	NA
UHGV-0175819_43	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0175819_43	COG	COG5492	NA	NA
UHGV-0175819_44	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0175819_44	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0175819_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175819_44	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0175819_46	PHROG	phrog_3558	tail protein	tail
UHGV-0175819_46	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0175819_46	eggNOG-mapper	1120933.ATUY01000004_gene1009	Prophage endopeptidase tail	NA
UHGV-0175819_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0175819_46	COG	COG4926	Phage-related protein	NA
UHGV-0175819_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0175819_47	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0175819_47	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0175819_47	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0175819_47	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0175819_47	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0175819_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175819_49	eggNOG-mapper	457396.CSBG_01055	NA	NA
UHGV-0175819_50	PHROG	phrog_885	major tail protein	tail
UHGV-0175819_50	UniRef90	UniRef90_UPI00164A9E72	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0175819_50	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0175819_50	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0175819_50	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0175819_51	Structural annotation	PF12691	NA	NA
UHGV-0175819_52	UniRef90	UniRef90_A0A561DSS0	HK97 gp10 family phage protein	NA
UHGV-0175819_52	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0175819_52	Structural annotation	TIGR01725	NA	NA
UHGV-0175819_53	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0175819_53	UniRef90	UniRef90_A0A098AU87	Gp16_SPP1: putative phage head-tail adaptor	NA
UHGV-0175819_53	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0175819_53	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0175819_53	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0175819_53	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175819_54	PHROG	phrog_5223	neck protein	connector
UHGV-0175819_54	UniRef90	UniRef90_A0A8J6P3F9	Phage gp6-like head-tail connector protein	NA
UHGV-0175819_54	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0175819_54	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0175819_54	Structural annotation	TIGR01560	NA	NA
UHGV-0175819_55	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175819_55	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0175819_55	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0175819_55	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175819_55	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175819_56	KOfam	K06904	NA	NA
UHGV-0175819_56	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0175819_56	UniRef90	UniRef90_A0A1C5W530	Phage prohead protease, HK97 family	NA
UHGV-0175819_56	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-0175819_56	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0175819_56	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0175819_56	COG	COG3740	Phage head maturation protease	NA
UHGV-0175819_56	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0175819_57	PHROG	phrog_12	portal protein	head and packaging
UHGV-0175819_57	UniRef90	UniRef90_UPI00195C5E58	phage portal protein	NA
UHGV-0175819_57	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-0175819_57	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0175819_57	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0175819_57	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0175819_58	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0175819_58	UniRef90	UniRef90_D1PNC7	Putative phage terminase, large subunit	NA
UHGV-0175819_58	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0175819_58	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0175819_58	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0175819_58	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0175819_58	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0175819_59	PHROG	phrog_13845	NA	unknown function
UHGV-0175819_59	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0175819_59	Structural annotation	PF05119, COG3747	NA	NA