UHGV-0175830

Genome information

Genome length 35,061 bps

CDS count 47

Completeness 91.00% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175830
vOTU ID	vOTU-066947
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578148
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.42
Jumbo phage	No

Genome content
Genome length	35,061 bps
GC content	52.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.91%
Average CDS length	702.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175830_1	PHROG	phrog_2536	Rz-like spanin	lysis
UHGV-0175830_1	eggNOG-mapper	637910.ROD_10412	NA	NA
UHGV-0175830_2	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0175830_2	PHROG	phrog_7	endolysin	lysis
UHGV-0175830_2	UniRef90	UniRef90_A0A2J4YKJ2	Lysozyme	NA
UHGV-0175830_2	eggNOG-mapper	399742.Ent638_2248	Phage lysozyme	NA
UHGV-0175830_2	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0175830_2	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0175830_2	HAMAP	MF_04110	Endolysin	NA
UHGV-0175830_2	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0175830_3	PHROG	phrog_9876	holin	lysis
UHGV-0175830_3	UniRef90	UniRef90_A0A2J5J0U6	Holin	NA
UHGV-0175830_3	eggNOG-mapper	1005994.GTGU_01414	lysis protein S	NA
UHGV-0175830_3	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0175830_3	Structural annotation	PF04971	NA	NA
UHGV-0175830_4	PHROG	phrog_19895	NA	unknown function
UHGV-0175830_5	PHROG	phrog_14442	tail protein	tail
UHGV-0175830_5	UniRef90	UniRef90_UPI0004476E05	phage tail fiber protein	NA
UHGV-0175830_5	eggNOG-mapper	1236000.L0ASZ2_9CAUD	NA	NA
UHGV-0175830_5	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0175830_6	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0175830_6	UniRef90	UniRef90_A0A6P1UTP0	Phage terminase large subunit	NA
UHGV-0175830_6	eggNOG-mapper	1005994.GTGU_01417	chromosome segregation	NA
UHGV-0175830_6	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0175830_6	COG	COG5410	NA	NA
UHGV-0175830_6	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5323	NA	NA
UHGV-0175830_7	PHROG	phrog_9277	NA	unknown function
UHGV-0175830_7	eggNOG-mapper	598467.BrE312_2692	NA	NA
UHGV-0175830_8	PHROG	phrog_8033	NA	unknown function
UHGV-0175830_9	PHROG	phrog_16310	NA	unknown function
UHGV-0175830_9	eggNOG-mapper	1005994.GTGU_01420	NA	NA
UHGV-0175830_9	Structural annotation	MF_04121	NA	NA
UHGV-0175830_10	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0175830_10	PHROG	phrog_1044	endolysin	lysis
UHGV-0175830_10	UniRef90	UniRef90_UPI000BA01BC7	transglycosylase SLT domain-containing protein	NA
UHGV-0175830_10	eggNOG-mapper	1005994.GTGU_01421	Transglycosylase SLT domain	NA
UHGV-0175830_10	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0175830_10	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0175830_11	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0175830_11	eggNOG-mapper	1005994.GTGU_01422	NA	NA
UHGV-0175830_11	Structural annotation	PF09486	NA	NA
UHGV-0175830_12	KOfam	K24217	mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]	NA
UHGV-0175830_12	PHROG	phrog_1249	acetyltransferase	other
UHGV-0175830_12	UniRef90	UniRef90_UPI001EF5FCE0	GNAT family N-acetyltransferase	NA
UHGV-0175830_12	eggNOG-mapper	343509.SG1191	Acetyltransferase (GNAT) family	NA
UHGV-0175830_12	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0175830_12	COG	COG1247	L-amino acid N-acyltransferase MnaT	NA
UHGV-0175830_12	Structural annotation	PF13527, MF_02210, NF000021, COG0456	NA	NA
UHGV-0175830_13	PHROG	phrog_376	tail protein	tail
UHGV-0175830_13	eggNOG-mapper	1005994.GTGU_01424	NA	NA
UHGV-0175830_13	Structural annotation	PF11134, MF_00923, NF008351, COG5276	NA	NA
UHGV-0175830_14	PHROG	phrog_394	tail protein	tail
UHGV-0175830_14	eggNOG-mapper	1005994.GTGU_01425	NA	NA
UHGV-0175830_14	Structural annotation	PF17212	NA	NA
UHGV-0175830_15	PHROG	phrog_3437	major head protein	head and packaging
UHGV-0175830_15	UniRef90	UniRef90_UPI000424618E	phage capsid protein	NA
UHGV-0175830_15	eggNOG-mapper	343509.SG1188	NA	NA
UHGV-0175830_15	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0175830_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0175830_16	PHROG	phrog_3742	NA	unknown function
UHGV-0175830_16	UniRef90	UniRef90_A0A5J6B4M5	Endoprotease	NA
UHGV-0175830_16	eggNOG-mapper	1005994.GTGU_01427	NA	NA
UHGV-0175830_17	PHROG	phrog_5977	NA	unknown function
UHGV-0175830_17	eggNOG-mapper	1005994.GTGU_01428	NA	NA
UHGV-0175830_18	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0175830_18	UniRef90	UniRef90_A0A2J4VV04	Phage tail protein	NA
UHGV-0175830_18	eggNOG-mapper	1005994.GTGU_01429	Bacteriophage head to tail connecting protein	NA
UHGV-0175830_18	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0175830_18	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0175830_19	PHROG	phrog_9015	NA	unknown function
UHGV-0175830_19	eggNOG-mapper	1005994.GTGU_01430	NA	NA
UHGV-0175830_20	PHROG	phrog_17476	NA	unknown function
UHGV-0175830_20	eggNOG-mapper	2342.SOPEG_1816	NA	NA
UHGV-0175830_21	PHROG	phrog_16553	transcriptional repressor	transcription regulation
UHGV-0175830_21	UniRef90	UniRef90_A0A5S4UJ76	Helix-turn-helix transcriptional regulator	NA
UHGV-0175830_21	eggNOG-mapper	2342.SOPEG_1041	NA	NA
UHGV-0175830_23	PHROG	phrog_1588	NA	unknown function
UHGV-0175830_23	UniRef90	UniRef90_UPI00111B6328	Ref family recombination enhancement nuclease	NA
UHGV-0175830_23	eggNOG-mapper	500637.PROVRUST_06745	NA	NA
UHGV-0175830_23	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-0175830_23	Structural annotation	PF16786	NA	NA
UHGV-0175830_24	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175830_24	UniRef90	UniRef90_A0A1Q8YNN0	NA	NA
UHGV-0175830_24	eggNOG-mapper	1080067.BAZH01000011_gene678	NA	NA
UHGV-0175830_24	Pfam	PF07105	NA	DUF1367
UHGV-0175830_24	Structural annotation	PF07105	NA	NA
UHGV-0175830_25	PHROG	phrog_340	NA	unknown function
UHGV-0175830_25	eggNOG-mapper	1115515.EV102420_14_01080	NA	NA
UHGV-0175830_26	PHROG	phrog_536	transcriptional regulator	transcription regulation
UHGV-0175830_26	eggNOG-mapper	343516.Q286W2_9CAUD	NA	NA
UHGV-0175830_28	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175830_28	UniRef90	UniRef90_R4YHL4	HNHc domain-containing protein	NA
UHGV-0175830_28	eggNOG-mapper	1278971.AOGF01000059_gene160	HNH endonuclease	NA
UHGV-0175830_28	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0175830_28	Structural annotation	PF13392, COG3415	NA	NA
UHGV-0175830_29	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0175830_29	UniRef90	UniRef90_A0A140NS95	NA	NA
UHGV-0175830_29	eggNOG-mapper	293826.Amet_2600	NA	NA
UHGV-0175830_30	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0175830_30	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0175830_30	UniRef90	UniRef90_A0A1Q8YNF8	Adenine methylase	NA
UHGV-0175830_30	eggNOG-mapper	1115515.EV102420_06_00040	Belongs to the MT-A70-like family	NA
UHGV-0175830_30	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0175830_30	Pfam	PF05063	MT-A70	MT-A70
UHGV-0175830_30	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0175830_30	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0175830_32	PHROG	phrog_1105	DNA polymerase III theta subunit	DNA, RNA and nucleotide metabolism
UHGV-0175830_32	eggNOG-mapper	1080067.BAZH01000011_gene676	NA	NA
UHGV-0175830_32	Structural annotation	PF11686, NF008207	NA	NA
UHGV-0175830_33	PHROG	phrog_4183	NA	unknown function
UHGV-0175830_33	eggNOG-mapper	1080067.BAZH01000011_gene675	NA	NA
UHGV-0175830_33	Structural annotation	PF01475, TIGR03433, COG1695	NA	NA
UHGV-0175830_34	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0175830_34	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0175830_34	UniRef90	UniRef90_A0A486VK47	DNA helicase	NA
UHGV-0175830_34	eggNOG-mapper	1080067.BAZH01000011_gene674	DnaB-like helicase N terminal domain	NA
UHGV-0175830_34	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0175830_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0175830_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0175830_34	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0175830_35	PHROG	phrog_1347	NA	unknown function
UHGV-0175830_35	UniRef90	UniRef90_A0A2J4ZHR7	Helix-turn-helix domain-containing protein	NA
UHGV-0175830_35	eggNOG-mapper	1080067.BAZH01000011_gene673	Helix-turn-helix domain	NA
UHGV-0175830_35	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0175830_35	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0175830_35	Structural annotation	PF13730, MF_01909, NF040939, COG5529	NA	NA
UHGV-0175830_36	PHROG	phrog_2465	NA	unknown function
UHGV-0175830_36	UniRef90	UniRef90_UPI00101F3756	adenylate cyclase	NA
UHGV-0175830_36	eggNOG-mapper	598467.BrE312_2720	NA	NA
UHGV-0175830_37	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0175830_37	UniRef90	UniRef90_A0A2J5J2K4	YdaT_toxin domain-containing protein	NA
UHGV-0175830_37	eggNOG-mapper	1080067.BAZH01000011_gene671	Putative bacterial toxin ydaT	NA
UHGV-0175830_37	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0175830_37	Structural annotation	PF06254	NA	NA
UHGV-0175830_38	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0175830_38	UniRef90	UniRef90_A0A8D6IGW7	HTH cro/C1-type domain-containing protein	NA
UHGV-0175830_38	eggNOG-mapper	1080067.BAZH01000011_gene670	Helix-turn-helix	NA
UHGV-0175830_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175830_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175830_39	UniRef90	UniRef90_A0A4R0HRJ9	Helix-turn-helix domain-containing protein	NA
UHGV-0175830_39	eggNOG-mapper	1115515.EV102420_14_01040	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175830_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175830_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0175830_39	Structural annotation	PF21291, MF_00535, NF007257, COG1396	NA	NA
UHGV-0175830_40	PHROG	phrog_2479	NA	unknown function
UHGV-0175830_40	eggNOG-mapper	1080067.BAZH01000011_gene669	NA	NA
UHGV-0175830_41	PHROG	phrog_36277	NA	unknown function
UHGV-0175830_43	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0175830_43	PHROG	phrog_2489	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175830_43	UniRef90	UniRef90_A0A486VJE1	Exodeoxyribonuclease VIII	NA
UHGV-0175830_43	eggNOG-mapper	1080067.BAZH01000011_gene667	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-0175830_43	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0175830_43	Structural annotation	PF06630, NF007259, COG4712	NA	NA
UHGV-0175830_44	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0175830_44	UniRef90	UniRef90_A0A378CJG6	Gp157 family protein	NA
UHGV-0175830_44	eggNOG-mapper	35703.DQ02_08995	Siphovirus Gp157	NA
UHGV-0175830_44	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0175830_44	Structural annotation	PF05565	NA	NA
UHGV-0175830_45	PHROG	phrog_2482	NA	unknown function
UHGV-0175830_45	eggNOG-mapper	35703.DQ02_09000	NA	NA
UHGV-0175830_46	PHROG	phrog_1266	excisionase	integration and excision
UHGV-0175830_46	UniRef90	UniRef90_A0A7U4GYZ6	NA	NA
UHGV-0175830_46	eggNOG-mapper	1443113.LC20_02243	NA	NA
UHGV-0175830_46	Pfam	PF13986	NA	DUF4224
UHGV-0175830_46	Structural annotation	PF13986	NA	NA
UHGV-0175830_47	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0175830_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0175830_47	UniRef90	UniRef90_UPI001CC127D2	tyrosine-type recombinase/integrase	NA
UHGV-0175830_47	eggNOG-mapper	1127516.H9C152_9CAUD	DNA integration	NA
UHGV-0175830_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175830_47	Structural annotation	PF00589, PF12834, PF12167, MF_01807, NF001399, NF041908, COG4974	NA	NA