UHGV-0175856

Genome information

Genome length 41,271 bps

CDS count 60

Completeness 97.22% (high-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175856
vOTU ID	vOTU-069943
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587899
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.94
Jumbo phage	No

Genome content
Genome length	41,271 bps
GC content	39.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.49%
Average CDS length	640.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175856_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0175856_1	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0175856_1	UniRef90	UniRef90_A0A416BKP7	Phage portal protein	NA
UHGV-0175856_1	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0175856_1	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0175856_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0175856_1	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0175856_1	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0175856_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175856_2	PHROG	phrog_10250	NA	unknown function
UHGV-0175856_2	UniRef90	UniRef90_A0A0F0C3Z2	Terminase-like family protein	NA
UHGV-0175856_2	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0175856_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175856_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175856_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175856_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175856_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175856_3	UniRef90	UniRef90_N9YY32	SPP1 family phage portal protein	NA
UHGV-0175856_3	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0175856_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175856_3	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0175856_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0175856_4	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0175856_4	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0175856_4	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0175856_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0175856_4	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0175856_4	COG	COG2369	NA	NA
UHGV-0175856_4	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0175856_7	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0175856_7	UniRef90	UniRef90_A0A844J9U3	NA	NA
UHGV-0175856_7	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0175856_7	Pfam	PF14265	NA	DUF4355
UHGV-0175856_7	Structural annotation	PF14265	NA	NA
UHGV-0175856_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-0175856_8	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0175856_8	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0175856_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0175856_9	PHROG	phrog_2724	NA	unknown function
UHGV-0175856_9	UniRef90	UniRef90_G5FH82	Rho_N domain-containing protein	NA
UHGV-0175856_9	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0175856_9	Structural annotation	PF07498	NA	NA
UHGV-0175856_10	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0175856_10	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-0175856_10	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0175856_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0175856_10	Structural annotation	PF05135	NA	NA
UHGV-0175856_11	PHROG	phrog_2168	NA	unknown function
UHGV-0175856_11	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0175856_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0175856_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175856_12	UniRef90	UniRef90_UPI0008314C69	HK97 gp10 family phage protein	NA
UHGV-0175856_12	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0175856_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175856_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0175856_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0175856_13	PHROG	phrog_78	tail terminator	connector
UHGV-0175856_13	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-0175856_13	Structural annotation	PF05657	NA	NA
UHGV-0175856_14	PHROG	phrog_158	major tail protein	tail
UHGV-0175856_14	UniRef90	UniRef90_UPI001EE81C1F	phage tail protein	NA
UHGV-0175856_14	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0175856_14	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0175856_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0175856_15	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0175856_15	UniRef90	UniRef90_UPI001D069341	NA	NA
UHGV-0175856_15	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0175856_15	Pfam	PF19591	NA	DUF6096
UHGV-0175856_15	Structural annotation	PF19591	NA	NA
UHGV-0175856_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0175856_17	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0175856_17	COG	COG5412	Phage-related protein	NA
UHGV-0175856_19	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0175856_19	COG	COG2314	NA	NA
UHGV-0175856_21	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0175856_22	eggNOG-mapper	553973.CLOHYLEM_06270	NA	NA
UHGV-0175856_23	UniRef90	UniRef90_R6AMY0	Putative catabolite control protein A	NA
UHGV-0175856_23	eggNOG-mapper	1408311.JNJM01000003_gene2963	NA	NA
UHGV-0175856_23	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0175856_24	PHROG	phrog_1194	NA	unknown function
UHGV-0175856_24	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0175856_24	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0175856_24	Pfam	PF20458	NA	DUF6711
UHGV-0175856_24	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0175856_25	PHROG	phrog_1401	NA	unknown function
UHGV-0175856_25	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0175856_25	eggNOG-mapper	1294142.CINTURNW_1041	NA	NA
UHGV-0175856_25	Structural annotation	PF07761	NA	NA
UHGV-0175856_26	PHROG	phrog_6616	tail protein	tail
UHGV-0175856_26	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-0175856_26	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0175856_26	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0175856_26	COG	COG4926	Phage-related protein	NA
UHGV-0175856_26	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0175856_27	PHROG	phrog_199	holin	lysis
UHGV-0175856_27	UniRef90	UniRef90_A0A3R6Q4W7	Holin	NA
UHGV-0175856_27	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0175856_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0175856_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0175856_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0175856_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0175856_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0175856_28	PHROG	phrog_35436	amidase	lysis
UHGV-0175856_28	UniRef90	UniRef90_UPI001959A1CC	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0175856_28	eggNOG-mapper	1235798.C817_04599	Ami_2	NA
UHGV-0175856_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0175856_28	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0175856_28	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0175856_28	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0175856_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0175856_30	PHROG	phrog_95	integrase	integration and excision
UHGV-0175856_30	UniRef90	UniRef90_A0A350S6L5	Recombinase family protein	NA
UHGV-0175856_30	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0175856_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0175856_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-0175856_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0175856_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0175856_30	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0175856_32	PHROG	phrog_87	metallo-protease	other
UHGV-0175856_32	UniRef90	UniRef90_UPI000E4A4CF7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0175856_32	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-0175856_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0175856_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0175856_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0175856_33	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0175856_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175856_33	UniRef90	UniRef90_R5ZAU1	Conserved domain protein	NA
UHGV-0175856_33	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0175856_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175856_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175856_33	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0175856_34	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0175856_34	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0175856_34	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0175856_34	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0175856_40	PHROG	phrog_14970	NA	unknown function
UHGV-0175856_40	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0175856_40	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0175856_40	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0175856_40	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0175856_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0175856_41	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0175856_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0175856_42	PHROG	phrog_7566	NA	unknown function
UHGV-0175856_42	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0175856_42	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0175856_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175856_43	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175856_43	UniRef90	UniRef90_UPI0018F5FF03	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0175856_43	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0175856_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175856_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175856_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175856_44	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0175856_45	PHROG	phrog_15768	NA	unknown function
UHGV-0175856_45	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-0175856_45	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0175856_45	AcrCatalog	cluster_38323	NA	NA
UHGV-0175856_45	Pfam	PF19808	NA	DUF6291
UHGV-0175856_45	Structural annotation	PF19808	NA	NA
UHGV-0175856_47	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0175856_47	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0175856_47	UniRef90	UniRef90_A0A3R6D3K6	Restriction alleviation protein, Lar family	NA
UHGV-0175856_47	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0175856_47	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0175856_47	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0175856_48	PHROG	phrog_20593	NA	unknown function
UHGV-0175856_49	PHROG	phrog_874	NA	unknown function
UHGV-0175856_49	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0175856_49	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0175856_49	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0175856_51	eggNOG-mapper	97139.C824_05979	NA	NA
UHGV-0175856_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0175856_52	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0175856_52	eggNOG-mapper	742733.HMPREF9469_01838	sulfate reduction	NA
UHGV-0175856_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0175856_52	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0175856_53	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0175856_53	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0175856_53	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0175856_53	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0175856_53	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0175856_53	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0175856_53	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0175856_53	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0175856_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175856_54	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0175856_54	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175856_54	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0175856_54	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0175856_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175856_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175856_54	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0175856_55	PHROG	phrog_38832	NA	unknown function
UHGV-0175856_55	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0175856_55	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0175856_56	PHROG	phrog_8684	NA	unknown function
UHGV-0175856_56	UniRef90	UniRef90_A0A3R6KSP4	YopX domain-containing protein	NA
UHGV-0175856_56	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-0175856_56	Pfam	PF09643	YopX protein	YopX
UHGV-0175856_56	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0175856_56	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0175856_57	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0175856_60	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175856_60	UniRef90	UniRef90_A0A3A9EXN8	RNA polymerase subunit sigma-70	NA
UHGV-0175856_60	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0175856_60	Structural annotation	PF07374	NA	NA