UHGV-0175863

Genome information

Genome length 25,871 bps

CDS count 51

Completeness 61.08% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175863
vOTU ID	vOTU-028852
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592906
BioSample	SAMN09781742
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.5
Jumbo phage	No

Genome content
Genome length	25,871 bps
GC content	41.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.78%
Average CDS length	477.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175863_2	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175863_2	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0175863_2	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0175863_2	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175863_3	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0175863_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175863_4	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0175863_4	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0175863_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175863_4	COG	COG2369	NA	NA
UHGV-0175863_4	Structural annotation	PF06152	NA	NA
UHGV-0175863_5	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175863_5	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0175863_5	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0175863_5	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175863_5	Structural annotation	PF11114	NA	NA
UHGV-0175863_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175863_7	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0175863_7	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0175863_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175863_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175863_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0175863_8	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0175863_8	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0175863_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175863_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175863_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175863_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175863_9	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0175863_9	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-0175863_9	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-0175863_9	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0175863_9	COG	COG5484	NA	NA
UHGV-0175863_9	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0175863_10	PHROG	phrog_9479	NA	unknown function
UHGV-0175863_10	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0175863_10	Structural annotation	PF15529	NA	NA
UHGV-0175863_13	PHROG	phrog_8680	NA	unknown function
UHGV-0175863_13	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0175863_13	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0175863_13	Pfam	PF14386	NA	DUF4417
UHGV-0175863_13	Structural annotation	PF14386	NA	NA
UHGV-0175863_14	UniRef90	UniRef90_UPI001C0249A7	ABC transporter ATP-binding protein	NA
UHGV-0175863_15	UniRef90	UniRef90_C7GC16	NA	NA
UHGV-0175863_15	Pfam	PF20037	NA	DUF6440
UHGV-0175863_15	Structural annotation	PF20037	NA	NA
UHGV-0175863_18	Structural annotation	PF16826	NA	NA
UHGV-0175863_19	PHROG	phrog_2232	NA	unknown function
UHGV-0175863_19	UniRef90	UniRef90_UPI00156FE4D8	NA	NA
UHGV-0175863_19	eggNOG-mapper	1035187.HMPREF9959_0414	NA	NA
UHGV-0175863_19	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0175863_19	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0175863_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0175863_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0175863_20	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0175863_20	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0175863_20	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0175863_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0175863_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0175863_20	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0175863_21	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0175863_21	UniRef90	UniRef90_A0A6L6XJP0	Radical SAM protein	NA
UHGV-0175863_21	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0175863_21	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0175863_21	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0175863_24	PHROG	phrog_20593	NA	unknown function
UHGV-0175863_25	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0175863_25	UniRef90	UniRef90_A0A1M6S2C1	Restriction alleviation protein Lar	NA
UHGV-0175863_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0175863_25	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0175863_25	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0175863_25	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0175863_27	PHROG	phrog_8684	NA	unknown function
UHGV-0175863_27	UniRef90	UniRef90_A0A414RA52	YopX domain-containing protein	NA
UHGV-0175863_27	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0175863_27	Pfam	PF09643	YopX protein	YopX
UHGV-0175863_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0175863_29	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0175863_29	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0175863_30	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-0175863_30	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0175863_31	PHROG	phrog_22292	NA	unknown function
UHGV-0175863_33	PHROG	phrog_37044	NA	unknown function
UHGV-0175863_33	eggNOG-mapper	397290.C810_00402	NA	NA
UHGV-0175863_34	PHROG	phrog_16304	NA	unknown function
UHGV-0175863_34	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-0175863_34	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0175863_34	Pfam	PF19808	NA	DUF6291
UHGV-0175863_34	Structural annotation	PF19808	NA	NA
UHGV-0175863_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175863_35	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175863_35	UniRef90	UniRef90_A0A415TWS7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0175863_35	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0175863_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175863_35	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0175863_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0175863_36	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0175863_36	UniRef90	UniRef90_A0A3R6DHY3	Bro-N domain-containing protein	NA
UHGV-0175863_36	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0175863_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175863_36	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0175863_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0175863_36	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0175863_37	PHROG	phrog_7566	NA	unknown function
UHGV-0175863_37	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0175863_38	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175863_38	UniRef90	UniRef90_D4L3P7	NA	NA
UHGV-0175863_38	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-0175863_38	Pfam	PF12684	NA	DUF3799
UHGV-0175863_38	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0175863_38	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0175863_39	PHROG	phrog_3657	NA	unknown function
UHGV-0175863_39	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-0175863_40	PHROG	phrog_1499	NA	unknown function
UHGV-0175863_40	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0175863_40	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0175863_40	PADLOC	AAA_15	NA	NA
UHGV-0175863_40	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0175863_40	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0175863_43	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-0175863_43	Structural annotation	COG3296	NA	NA
UHGV-0175863_44	PHROG	phrog_36464	NA	unknown function
UHGV-0175863_44	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0175863_44	Structural annotation	PF09035	NA	NA
UHGV-0175863_45	PHROG	phrog_4621	NA	unknown function
UHGV-0175863_45	eggNOG-mapper	1415774.U728_1710	NA	NA
UHGV-0175863_48	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0175863_48	UniRef90	UniRef90_A0A6I3QFI4	XRE family transcriptional regulator	NA
UHGV-0175863_48	eggNOG-mapper	1158607.UAU_01000	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175863_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175863_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0175863_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0175863_49	UniRef90	UniRef90_A0A396Q4T8	XRE family transcriptional regulator	NA
UHGV-0175863_49	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0175863_49	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0175863_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0175863_50	PHROG	phrog_87	metallo-protease	other
UHGV-0175863_50	UniRef90	UniRef90_A0A6L5YMW0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0175863_50	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0175863_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0175863_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0175863_50	Structural annotation	PF06114, COG2856	NA	NA