UHGV-0175866

Genome information

Genome length 23,743 bps

CDS count 37

Completeness 59.06% (medium-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175866
vOTU ID	vOTU-028853
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592903
BioSample	SAMN09781742
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.76
Jumbo phage	No

Genome content
Genome length	23,743 bps
GC content	54.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	87.82%
Average CDS length	566.35 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175866_1	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0175866_1	UniRef90	UniRef90_A0A291T8I8	Spo0A_C domain-containing protein	NA
UHGV-0175866_1	eggNOG-mapper	33035.JPJF01000025_gene2627	protein-glutamate methylesterase activity	NA
UHGV-0175866_1	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0175866_1	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0175866_1	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0175866_2	PHROG	phrog_263	holin	lysis
UHGV-0175866_2	UniRef90	UniRef90_A0A2A7AI87	Phage holin	NA
UHGV-0175866_2	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0175866_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0175866_2	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0175866_2	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0175866_3	PHROG	phrog_3366	NA	unknown function
UHGV-0175866_3	Structural annotation	PF20536	NA	NA
UHGV-0175866_4	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175866_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175866_5	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0175866_5	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0175866_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175866_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0175866_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0175866_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175866_6	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175866_6	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-0175866_6	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0175866_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175866_6	Structural annotation	PF06810	NA	NA
UHGV-0175866_7	PHROG	phrog_3675	NA	unknown function
UHGV-0175866_7	UniRef90	UniRef90_A0A2A7AIK7	Dihydrolipoyl dehydrogenase	NA
UHGV-0175866_7	eggNOG-mapper	1122173.AXVL01000018_gene435	YjcQ protein	NA
UHGV-0175866_7	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0175866_7	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0175866_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175866_9	UniRef90	UniRef90_UPI00122C2EE8	phage minor capsid protein	NA
UHGV-0175866_9	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0175866_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175866_9	COG	COG2369	NA	NA
UHGV-0175866_9	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0175866_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175866_10	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-0175866_10	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0175866_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175866_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175866_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0175866_11	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0175866_11	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0175866_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0175866_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175866_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175866_12	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0175866_12	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0175866_12	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0175866_12	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0175866_12	Structural annotation	PF07141	NA	NA
UHGV-0175866_13	PHROG	phrog_13321	NA	unknown function
UHGV-0175866_13	UniRef90	UniRef90_E2ZNR3	Radical SAM domain protein	NA
UHGV-0175866_13	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0175866_13	COG	COG1533	DNA repair photolyase	NA
UHGV-0175866_13	Structural annotation	PF20903, MF_00660, NF033668, COG1180	NA	NA
UHGV-0175866_14	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175866_14	UniRef90	UniRef90_E2ZNR4	ParB domain-containing protein	NA
UHGV-0175866_14	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0175866_14	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0175866_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175866_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175866_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175866_15	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0175866_16	KOfam	K03700	recU; recombination protein U	NA
UHGV-0175866_16	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175866_16	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-0175866_16	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0175866_16	Pfam	PF03838	Recombination protein U	RecU
UHGV-0175866_16	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0175866_16	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0175866_17	PHROG	phrog_3136	NA	unknown function
UHGV-0175866_17	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0175866_17	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0175866_17	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0175866_17	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0175866_18	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0175866_18	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-0175866_20	PHROG	phrog_3253	NA	unknown function
UHGV-0175866_20	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-0175866_20	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0175866_20	Structural annotation	PF18618	NA	NA
UHGV-0175866_22	PHROG	phrog_6568	NA	unknown function
UHGV-0175866_22	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0175866_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0175866_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0175866_23	UniRef90	UniRef90_A0A3E2UF94	DNA methylase N-4	NA
UHGV-0175866_23	eggNOG-mapper	936573.HMPREF1147_1705	DEAD-like helicases superfamily	NA
UHGV-0175866_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0175866_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0175866_23	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0175866_24	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0175866_24	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0175866_24	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0175866_24	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0175866_24	Structural annotation	PF05565	NA	NA
UHGV-0175866_25	Structural annotation	PF11417	NA	NA
UHGV-0175866_26	PHROG	phrog_15768	NA	unknown function
UHGV-0175866_26	UniRef90	UniRef90_A0A6N7TND1	NA	NA
UHGV-0175866_26	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0175866_26	Pfam	PF19808	NA	DUF6291
UHGV-0175866_26	Structural annotation	PF19808	NA	NA
UHGV-0175866_27	Structural annotation	PF20964, PF13384, NF011523	NA	NA
UHGV-0175866_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0175866_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0175866_28	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0175866_28	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0175866_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0175866_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0175866_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0175866_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0175866_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0175866_29	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175866_29	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0175866_29	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0175866_29	Pfam	PF04404	ERF superfamily	ERF
UHGV-0175866_29	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0175866_30	PHROG	phrog_38771	NA	unknown function
UHGV-0175866_34	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0175866_34	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0175866_34	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175866_35	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0175866_35	UniRef90	UniRef90_A6NWY1	BRO family, N-terminal domain protein	NA
UHGV-0175866_35	eggNOG-mapper	411471.SUBVAR_04440	BRO family, N-terminal domain	NA
UHGV-0175866_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0175866_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0175866_35	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0175866_37	PHROG	phrog_2232	NA	unknown function
UHGV-0175866_37	UniRef90	UniRef90_A0A6A7K9D3	NA	NA
UHGV-0175866_37	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0175866_37	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0175866_37	Structural annotation	PF14337, TIGR03899	NA	NA