UHGV-0175867

Genome information

Genome length 39,290 bps

CDS count 45

Completeness 92.14% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175867
vOTU ID	vOTU-064941
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592902
BioSample	SAMN09781742
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54
Jumbo phage	No

Genome content
Genome length	39,290 bps
GC content	39.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.17%
Average CDS length	808.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175867_1	Structural annotation	PF10096, PF21644, TIGR02764, COG0726	NA	NA
UHGV-0175867_3	PHROG	phrog_3558	tail protein	tail
UHGV-0175867_3	UniRef90	UniRef90_A0A417UT74	Prophage_tail domain-containing protein	NA
UHGV-0175867_3	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0175867_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0175867_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0175867_3	COG	COG4926	Phage-related protein	NA
UHGV-0175867_3	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0175867_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0175867_4	UniRef90	UniRef90_A0A417USV5	MtfA protein	NA
UHGV-0175867_4	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0175867_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175867_4	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0175867_5	PHROG	phrog_19074	NA	unknown function
UHGV-0175867_5	UniRef90	UniRef90_UPI001C027781	phage tail tape measure protein	NA
UHGV-0175867_5	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0175867_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0175867_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0175867_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0175867_5	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0175867_6	PHROG	phrog_706	NA	unknown function
UHGV-0175867_6	UniRef90	UniRef90_A0A6N2R3Z6	Bacteriophage Gp15 protein	NA
UHGV-0175867_6	eggNOG-mapper	1235799.C818_04230	Bacteriophage Gp15 protein	NA
UHGV-0175867_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0175867_6	Structural annotation	PF06854	NA	NA
UHGV-0175867_7	PHROG	phrog_4450	NA	unknown function
UHGV-0175867_7	eggNOG-mapper	1235799.C818_04229	NA	NA
UHGV-0175867_7	Pfam	PF20378	NA	DUF6673
UHGV-0175867_7	Structural annotation	PF20378	NA	NA
UHGV-0175867_8	PHROG	phrog_3099	NA	unknown function
UHGV-0175867_8	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0175867_8	eggNOG-mapper	1151292.QEW_4530	NA	NA
UHGV-0175867_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175867_9	PHROG	phrog_3266	tail completion	connector
UHGV-0175867_9	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0175867_9	eggNOG-mapper	1235799.C818_04227	NA	NA
UHGV-0175867_9	Structural annotation	PF12691	NA	NA
UHGV-0175867_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0175867_10	UniRef90	UniRef90_UPI001C012488	minor capsid protein	NA
UHGV-0175867_10	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0175867_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0175867_10	Structural annotation	PF11114	NA	NA
UHGV-0175867_11	PHROG	phrog_3366	NA	unknown function
UHGV-0175867_11	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0175867_11	Pfam	PF20536	NA	DUF6751
UHGV-0175867_11	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0175867_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0175867_12	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0175867_13	PHROG	phrog_247	major head protein	head and packaging
UHGV-0175867_13	UniRef90	UniRef90_A0A1Q2C3W4	Phage coat protein	NA
UHGV-0175867_13	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0175867_13	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0175867_13	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0175867_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0175867_14	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0175867_14	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0175867_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0175867_14	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0175867_16	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0175867_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0175867_16	UniRef90	UniRef90_A0A1Q6KF97	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0175867_16	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0175867_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0175867_16	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0175867_16	COG	COG2369	NA	NA
UHGV-0175867_16	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0175867_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0175867_17	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0175867_17	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0175867_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175867_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0175867_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175867_18	PHROG	phrog_10250	NA	unknown function
UHGV-0175867_18	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0175867_18	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0175867_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175867_18	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0175867_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175867_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175867_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175867_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0175867_19	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0175867_19	UniRef90	UniRef90_A0A1Q6KFD5	Phage portal protein	NA
UHGV-0175867_19	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0175867_19	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0175867_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0175867_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175867_19	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0175867_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0175867_22	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0175867_22	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0175867_22	Structural annotation	PF02996	NA	NA
UHGV-0175867_23	PHROG	phrog_30258	NA	unknown function
UHGV-0175867_25	Structural annotation	MF_00773, NF011481, COG2888	NA	NA
UHGV-0175867_26	PHROG	phrog_31515	NA	unknown function
UHGV-0175867_26	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0175867_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0175867_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0175867_27	UniRef90	UniRef90_A0A173S305	DNA methylase	NA
UHGV-0175867_27	eggNOG-mapper	469618.FVAG_01298	SNF2 family N-terminal domain	NA
UHGV-0175867_27	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0175867_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0175867_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0175867_27	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0175867_28	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175867_28	UniRef90	UniRef90_A0A173S1G6	VRR-NUC domain	NA
UHGV-0175867_28	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-0175867_28	Structural annotation	PF18741	NA	NA
UHGV-0175867_29	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0175867_29	UniRef90	UniRef90_A0A173S1C5	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0175867_29	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-0175867_29	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0175867_29	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0175867_29	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0175867_30	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0175867_30	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0175867_30	UniRef90	UniRef90_A0A173S361	DNA polymerase I, thermostable	NA
UHGV-0175867_30	eggNOG-mapper	86416.Clopa_0561	DNA polymerase	NA
UHGV-0175867_30	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0175867_30	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0175867_30	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0175867_31	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175867_31	UniRef90	UniRef90_UPI0009F98B20	NA	NA
UHGV-0175867_31	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-0175867_31	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0175867_31	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0175867_32	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175867_32	UniRef90	UniRef90_R7MZ29	NA	NA
UHGV-0175867_32	eggNOG-mapper	469618.FVAG_01292	NA	NA
UHGV-0175867_32	Pfam	PF10926	NA	DUF2800
UHGV-0175867_32	COG	COG2887	RecB family exonuclease	NA
UHGV-0175867_32	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0175867_33	PHROG	phrog_18562	NA	unknown function
UHGV-0175867_33	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-0175867_38	PHROG	phrog_6058	NA	unknown function
UHGV-0175867_38	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0175867_38	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0175867_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0175867_40	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0175867_40	UniRef90	UniRef90_A0A173RFH2	Helix-turn-helix	NA
UHGV-0175867_40	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175867_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175867_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0175867_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0175867_41	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0175867_41	UniRef90	UniRef90_A0A173REI3	Helix-turn-helix	NA
UHGV-0175867_41	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0175867_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0175867_41	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0175867_41	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0175867_42	PHROG	phrog_87	metallo-protease	other
UHGV-0175867_42	UniRef90	UniRef90_A0A173RF40	Metallopeptidase immA	NA
UHGV-0175867_42	eggNOG-mapper	742740.HMPREF9474_03480	NA	NA
UHGV-0175867_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0175867_42	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0175867_42	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0175867_43	eggNOG-mapper	97139.C824_05939	NA	NA
UHGV-0175867_44	KOfam	K14059	int; integrase	NA
UHGV-0175867_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0175867_44	UniRef90	UniRef90_UPI001EDF286E	tyrosine-type recombinase/integrase	NA
UHGV-0175867_44	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0175867_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0175867_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0175867_44	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0175867_45	KOfam	K01462	PDF, def; peptide deformylase [EC:3.5.1.88]	NA
UHGV-0175867_45	PHROG	phrog_2890	peptide deformylase	other
UHGV-0175867_45	UniRef90	UniRef90_D4N0J6	N-formylmethionyl-tRNA deformylase	NA
UHGV-0175867_45	eggNOG-mapper	397288.C806_02914	Removes the formyl group from the N-terminal Met of newly synthesized proteins	NA
UHGV-0175867_45	Pfam	PF01327	Polypeptide deformylase	Pep_deformylase
UHGV-0175867_45	NCBIFam	NF006670.0	peptide deformylase	NA
UHGV-0175867_45	COG	COG0242	Peptide deformylase	NA
UHGV-0175867_45	Structural annotation	PF01327, MF_00163, NF006670, COG0242	NA	NA