UHGV-0175903

Genome information

Genome length 11,984 bps

CDS count 16

Completeness 72.29% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175903
vOTU ID	vOTU-028857
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581981
BioSample	SAMN09781719
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.95
Jumbo phage	No

Genome content
Genome length	11,984 bps
GC content	38.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	16
CDS density	85.64%
Average CDS length	642.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175903_1	eggNOG-mapper	565033.GACE_1373	Bifunctional DNA primase polymerase	NA
UHGV-0175903_1	Pfam	PF00647	Elongation factor 1 gamma, conserved domain	EF1G
UHGV-0175903_1	Structural annotation	PF16793, PF04492, MF_00700, MF_01819, NF040561, NF033788, TIGR01610, COG1846	NA	NA
UHGV-0175903_2	UniRef90	UniRef90_A0A8G7NX31	DNA-binding protein	NA
UHGV-0175903_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0175903_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0175903_2	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0175903_2	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0175903_6	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175903_6	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0175903_6	Structural annotation	PF20987, TIGR01453	NA	NA
UHGV-0175903_8	eggNOG-mapper	693746.OBV_p-00630	NA	NA
UHGV-0175903_9	UniRef90	UniRef90_UPI00189BC11D	phage head closure protein	NA
UHGV-0175903_9	eggNOG-mapper	457415.HMPREF1006_01810	Phage head-tail joining protein	NA
UHGV-0175903_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0175903_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0175903_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0175903_10	UniRef90	UniRef90_A0A353BS66	Terminase large subunit	NA
UHGV-0175903_10	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0175903_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0175903_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0175903_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0175903_10	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0175903_11	PHROG	phrog_1066	NA	unknown function
UHGV-0175903_11	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0175903_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0175903_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0175903_12	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175903_12	UniRef90	UniRef90_UPI00195C7236	HNH endonuclease	NA
UHGV-0175903_12	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0175903_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0175903_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0175903_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0175903_13	UniRef90	UniRef90_A0A0V8JHQ1	DNA packaging protein	NA
UHGV-0175903_13	eggNOG-mapper	1089548.KI783301_gene3223	NA	NA
UHGV-0175903_13	AcrCatalog	cluster_178303	NA	NA
UHGV-0175903_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0175903_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0175903_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0175903_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175903_14	UniRef90	UniRef90_A0A357CLM9	Phage major capsid protein	NA
UHGV-0175903_14	eggNOG-mapper	1167632.AJTR01000015_gene1286	Phage capsid family	NA
UHGV-0175903_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175903_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0175903_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0175903_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175903_15	KOfam	K06904	NA	NA
UHGV-0175903_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0175903_15	UniRef90	UniRef90_A0A151AT28	Caudovirus prohead protease	NA
UHGV-0175903_15	eggNOG-mapper	1089548.KI783301_gene3225	Caudovirus prohead serine protease	NA
UHGV-0175903_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0175903_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0175903_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0175903_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0175903_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0175903_16	UniRef90	UniRef90_UPI0018A06444	phage portal protein	NA
UHGV-0175903_16	eggNOG-mapper	1089548.KI783301_gene3227	Phage portal protein	NA
UHGV-0175903_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0175903_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0175903_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0175903_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA