UHGV-0175962

Genome information

Genome length 28,588 bps

CDS count 45

Completeness 74.99% (medium-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175962
vOTU ID	vOTU-028834
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580126
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.49
Jumbo phage	No

Genome content
Genome length	28,588 bps
GC content	36.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.69%
Average CDS length	592.00 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175962_2	PHROG	phrog_4729	NA	unknown function
UHGV-0175962_2	UniRef90	UniRef90_A0A8E5K7D2	Putative Cas system-associated protein	NA
UHGV-0175962_2	eggNOG-mapper	1229517.AMFD01000025_gene930	NA	NA
UHGV-0175962_3	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175962_3	UniRef90	UniRef90_UPI000C7A4314	NA	NA
UHGV-0175962_3	eggNOG-mapper	213777.R9R1G5_9CAUD	NA	NA
UHGV-0175962_3	Pfam	PF06378	NA	DUF1071
UHGV-0175962_3	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0175962_4	PHROG	phrog_1163	NA	unknown function
UHGV-0175962_4	UniRef90	UniRef90_A0A091BRY9	Prephenate dehydrogenase	NA
UHGV-0175962_4	eggNOG-mapper	1225805.J7KBV5_9CAUD	calcium ion binding	NA
UHGV-0175962_4	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0175962_4	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0175962_4	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0175962_4	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG5529	NA	NA
UHGV-0175962_5	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0175962_5	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0175962_5	UniRef90	UniRef90_A0A6L2ZYN3	AAA domain-containing protein	NA
UHGV-0175962_5	eggNOG-mapper	1229517.AMFD01000023_gene1341	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages. 33 identical to the orf12 of the phage r1t. Functional equivalent to DnaC of E.coli or DnaI of B.subtilis, which are required for chromosomal replication	NA
UHGV-0175962_5	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0175962_5	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0175962_5	Structural annotation	PF01695, MF_00377, NF006505, COG1484	NA	NA
UHGV-0175962_7	PHROG	phrog_2108	NA	unknown function
UHGV-0175962_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0175962_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0175962_8	UniRef90	UniRef90_K2PT75	Phage resolvase	NA
UHGV-0175962_8	eggNOG-mapper	1231377.C426_1966	Endodeoxyribonuclease RusA	NA
UHGV-0175962_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0175962_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0175962_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0175962_9	PHROG	phrog_1415	NA	unknown function
UHGV-0175962_9	UniRef90	UniRef90_UPI001BCCDABF	helix-turn-helix domain-containing protein	NA
UHGV-0175962_10	PHROG	phrog_3109	NA	unknown function
UHGV-0175962_10	eggNOG-mapper	416870.llmg_2122	NA	NA
UHGV-0175962_10	Pfam	PF06275	NA	DUF1031
UHGV-0175962_10	Structural annotation	PF06275	NA	NA
UHGV-0175962_11	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0175962_11	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0175962_11	UniRef90	UniRef90_K2PTY6	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0175962_11	eggNOG-mapper	1231377.C426_1708	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0175962_11	Pfam	PF00692	dUTPase	dUTPase
UHGV-0175962_11	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0175962_11	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0175962_11	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0175962_12	PHROG	phrog_23093	NA	unknown function
UHGV-0175962_12	UniRef90	UniRef90_UPI000A6B3D34	NA	NA
UHGV-0175962_14	PHROG	phrog_7446	NA	unknown function
UHGV-0175962_14	UniRef90	UniRef90_T2F814	Phage-related protein	NA
UHGV-0175962_15	PHROG	phrog_121	NA	unknown function
UHGV-0175962_15	UniRef90	UniRef90_A0A5M9REY1	NA	NA
UHGV-0175962_15	eggNOG-mapper	1231377.C426_1970	NA	NA
UHGV-0175962_15	Pfam	PF07852	NA	DUF1642
UHGV-0175962_15	Structural annotation	PF07852	NA	NA
UHGV-0175962_16	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0175962_16	UniRef90	UniRef90_UPI0018997E47	NA	NA
UHGV-0175962_16	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0175962_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0175962_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0175962_17	UniRef90	UniRef90_UPI001F1D79DC	site-specific DNA-methyltransferase	NA
UHGV-0175962_17	eggNOG-mapper	1408823.AXUS01000035_gene1787	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0175962_17	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0175962_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0175962_17	COG	COG0863	DNA modification methylase	NA
UHGV-0175962_17	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0175962_18	UniRef90	UniRef90_UPI0013FD5769	helix-turn-helix transcriptional regulator	NA
UHGV-0175962_21	PHROG	phrog_2316	NA	unknown function
UHGV-0175962_21	UniRef90	UniRef90_UPI0003F57BD1	NA	NA
UHGV-0175962_21	eggNOG-mapper	1173745.A0A059TAL2_9CAUD	NA	NA
UHGV-0175962_21	Pfam	PF16475	NA	DUF5052
UHGV-0175962_21	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0175962_22	PHROG	phrog_2198	Alt-like transcription activator	transcription regulation
UHGV-0175962_22	UniRef90	UniRef90_A0A1I4I5A4	Phage transcriptional activator, RinA family	NA
UHGV-0175962_22	eggNOG-mapper	1229517.AMFD01000018_gene191	NA	NA
UHGV-0175962_22	Pfam	PF05263	NA	DUF722
UHGV-0175962_22	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0175962_22	Structural annotation	PF05263, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0175962_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0175962_23	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0175962_23	UniRef90	UniRef90_UPI00189A592B	DNA modification methylase	NA
UHGV-0175962_23	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-0175962_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0175962_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175962_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0175962_23	COG	COG0863	DNA modification methylase	NA
UHGV-0175962_23	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0175962_24	UniRef90	UniRef90_A0A345MPV9	Terminase small subunit	NA
UHGV-0175962_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0175962_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0175962_25	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0175962_25	UniRef90	UniRef90_A0A1X9IGF9	Terminase_6C domain-containing protein	NA
UHGV-0175962_25	eggNOG-mapper	1235798.C817_03482	Terminase-like family	NA
UHGV-0175962_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0175962_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0175962_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0175962_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0175962_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0175962_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0175962_26	UniRef90	UniRef90_A0A7T4NJS3	Phage portal protein	NA
UHGV-0175962_26	eggNOG-mapper	1158609.I586_00078	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0175962_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0175962_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0175962_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0175962_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0175962_27	UniRef90	UniRef90_A0A1X9IGG3	Phage_Mu_F domain-containing protein	NA
UHGV-0175962_27	eggNOG-mapper	1139219.I569_01382	Phage Mu protein F like protein	NA
UHGV-0175962_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0175962_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0175962_27	COG	COG2369	NA	NA
UHGV-0175962_27	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0175962_29	PHROG	phrog_909	major head protein	head and packaging
UHGV-0175962_29	UniRef90	UniRef90_Q037D6	NA	NA
UHGV-0175962_29	eggNOG-mapper	543734.LCABL_13280	NA	NA
UHGV-0175962_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0175962_30	UniRef90	UniRef90_UPI001073F540	major capsid protein	NA
UHGV-0175962_30	eggNOG-mapper	565664.EFXG_01167	Phage major capsid protein E	NA
UHGV-0175962_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0175962_30	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0175962_31	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0175962_31	UniRef90	UniRef90_UPI0010730A93	phage head-tail connector protein	NA
UHGV-0175962_31	eggNOG-mapper	1423724.BAMM01000023_gene1909	Phage gp6-like head-tail connector protein	NA
UHGV-0175962_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0175962_31	Structural annotation	PF05135	NA	NA
UHGV-0175962_32	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0175962_32	eggNOG-mapper	1034809.SLUG_08700	NA	NA
UHGV-0175962_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0175962_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0175962_33	UniRef90	UniRef90_UPI00111124B6	HK97 gp10 family phage protein	NA
UHGV-0175962_33	eggNOG-mapper	139872.Q6SEC9_9CAUD	exonuclease activity	NA
UHGV-0175962_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0175962_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0175962_33	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0175962_34	PHROG	phrog_176	tail terminator	connector
UHGV-0175962_34	UniRef90	UniRef90_UPI0010746E8A	NA	NA
UHGV-0175962_34	Structural annotation	PF11367	NA	NA
UHGV-0175962_35	PHROG	phrog_238	major tail protein	tail
UHGV-0175962_35	UniRef90	UniRef90_A0A7T4NJV4	Phage major tail protein, TP901-1 family	NA
UHGV-0175962_35	eggNOG-mapper	1605.Lani381_0866	Phage tail tube protein	NA
UHGV-0175962_35	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0175962_35	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0175962_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0175962_36	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0175962_36	Structural annotation	PF12363	NA	NA
UHGV-0175962_38	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0175962_38	UniRef90	UniRef90_A0A1X9IGH8	TMP_3 domain-containing protein	NA
UHGV-0175962_38	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0175962_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0175962_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0175962_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0175962_39	UniRef90	UniRef90_V7HYP3	Putative prophage protein	NA
UHGV-0175962_39	eggNOG-mapper	349123.Lreu23DRAFT_4199	phage tail	NA
UHGV-0175962_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0175962_40	PHROG	phrog_3558	tail protein	tail
UHGV-0175962_40	UniRef90	UniRef90_A0A1X9IGI5	Prophage_tail domain-containing protein	NA
UHGV-0175962_40	eggNOG-mapper	930946.AEOP01000015_gene780	Prophage endopeptidase tail	NA
UHGV-0175962_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0175962_40	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0175962_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0175962_41	PHROG	phrog_14448	NA	unknown function
UHGV-0175962_41	UniRef90	UniRef90_A0A1X9IGH6	BppU_IgG domain-containing protein	NA
UHGV-0175962_41	eggNOG-mapper	930946.AEOP01000044_gene15	NA	NA
UHGV-0175962_41	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0175962_43	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0175962_44	PHROG	phrog_10512	virion structural protein	head and packaging