UHGV-0175964

Genome information

Genome length 37,409 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0175964
vOTU ID	vOTU-046563
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580119
BioSample	SAMN09781691
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.67
Jumbo phage	No

Genome content
Genome length	37,409 bps
GC content	44.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.96%
Average CDS length	581.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0175964_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0175964_3	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175964_3	UniRef90	UniRef90_A0A837WMD3	YqaJ domain-containing protein	NA
UHGV-0175964_3	eggNOG-mapper	1120963.KB894511_gene2520	COG5377 Phage-related protein	NA
UHGV-0175964_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0175964_3	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0175964_3	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0175964_3	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0175964_4	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0175964_4	UniRef90	UniRef90_A0A345N236	RecT protein	NA
UHGV-0175964_4	eggNOG-mapper	1089439.KB902270_gene2623	NA	NA
UHGV-0175964_7	PHROG	phrog_8329	NA	unknown function
UHGV-0175964_9	PHROG	phrog_9288	NA	unknown function
UHGV-0175964_11	KOfam	K03279	waaJ, rfaJ; UDP-glucose:(galactosyl)LPS alpha-1,2-glucosyltransferase [EC:2.4.1.58]	NA
UHGV-0175964_11	UniRef90	UniRef90_A0A662ZK78	Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase	NA
UHGV-0175964_11	Pfam	PF01501	Glycosyl transferase family 8	Glyco_transf_8
UHGV-0175964_11	COG	COG1442	Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase	NA
UHGV-0175964_12	PHROG	phrog_469	tail protein	tail
UHGV-0175964_12	UniRef90	UniRef90_A0A662ZJR2	Phage tail protein	NA
UHGV-0175964_12	eggNOG-mapper	1200567.JNKD01000011_gene685	cellulase activity	NA
UHGV-0175964_12	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0175964_12	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0175964_12	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0175964_12	Structural annotation	PF13550, NF040662, TIGR01683, COG4733, COG2104	NA	NA
UHGV-0175964_14	PHROG	phrog_396	minor tail protein	tail
UHGV-0175964_14	UniRef90	UniRef90_UPI00190E7506	NA	NA
UHGV-0175964_14	eggNOG-mapper	1265507.KB899637_gene597	NA	NA
UHGV-0175964_14	Pfam	PF08875	NA	DUF1833
UHGV-0175964_14	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0175964_17	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0175964_17	eggNOG-mapper	1265507.KB899636_gene1669	NA	NA
UHGV-0175964_18	PHROG	phrog_9483	tail length tape measure protein	tail
UHGV-0175964_18	UniRef90	UniRef90_A0A550J2S1	TMP_3 domain-containing protein	NA
UHGV-0175964_18	eggNOG-mapper	1265507.KB899636_gene1668	Mu-like prophage protein	NA
UHGV-0175964_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0175964_18	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0175964_21	PHROG	phrog_158	major tail protein	tail
UHGV-0175964_21	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0175964_21	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0175964_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0175964_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0175964_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0175964_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0175964_25	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0175964_25	UniRef90	UniRef90_UPI0003DFBDA8	head-tail connector protein	NA
UHGV-0175964_25	eggNOG-mapper	557598.LHK_01771	Phage gp6-like head-tail connector protein	NA
UHGV-0175964_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0175964_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0175964_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0175964_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0175964_26	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0175964_26	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0175964_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0175964_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0175964_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0175964_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0175964_27	KOfam	K06904	NA	NA
UHGV-0175964_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0175964_27	UniRef90	UniRef90_C9M6U6	Phage prohead protease, HK97 family	NA
UHGV-0175964_27	eggNOG-mapper	645512.GCWU000246_00696	Phage prohead protease, HK97 family	NA
UHGV-0175964_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0175964_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0175964_27	COG	COG3740	Phage head maturation protease	NA
UHGV-0175964_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0175964_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0175964_28	UniRef90	UniRef90_A0A3D4G7C4	Phage portal protein	NA
UHGV-0175964_28	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0175964_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0175964_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0175964_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0175964_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0175964_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0175964_29	UniRef90	UniRef90_UPI0006710F9A	terminase large subunit	NA
UHGV-0175964_29	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0175964_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0175964_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0175964_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0175964_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0175964_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0175964_30	UniRef90	UniRef90_R5EL15	Putative phage terminase small subunit protein	NA
UHGV-0175964_30	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0175964_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0175964_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0175964_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0175964_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0175964_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0175964_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175964_31	UniRef90	UniRef90_UPI001E5C34AD	HNH endonuclease	NA
UHGV-0175964_31	eggNOG-mapper	10717.Q38456_BPPH1	HNH endonuclease	NA
UHGV-0175964_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0175964_31	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0175964_33	PHROG	phrog_20533	NA	unknown function
UHGV-0175964_33	UniRef90	UniRef90_A0A413FXL7	PLD phosphodiesterase domain-containing protein	NA
UHGV-0175964_33	eggNOG-mapper	1123058.KB894251_gene2369	NA	NA
UHGV-0175964_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0175964_35	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175964_35	UniRef90	UniRef90_C7RH97	ParB domain protein nuclease	NA
UHGV-0175964_35	eggNOG-mapper	525919.Apre_0830	ParB-like nuclease domain	NA
UHGV-0175964_35	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0175964_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175964_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175964_36	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0175964_36	PHROG	phrog_7	endolysin	lysis
UHGV-0175964_36	UniRef90	UniRef90_A0A6J5YJS8	Endolysin	NA
UHGV-0175964_36	eggNOG-mapper	67571.LYS_BPAPS	Phage lysozyme	NA
UHGV-0175964_36	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0175964_36	HAMAP	MF_04110	Endolysin	NA
UHGV-0175964_36	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0175964_37	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0175964_37	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0175964_37	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0175964_38	PHROG	phrog_824	NA	unknown function
UHGV-0175964_38	UniRef90	UniRef90_A0A0C7SLG5	VRR-NUC domain-containing protein	NA
UHGV-0175964_38	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0175964_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0175964_38	Structural annotation	PF08774	NA	NA
UHGV-0175964_39	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0175964_43	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0175964_43	UniRef90	UniRef90_A0A6M0LEA8	Chromosome partitioning protein ParB	NA
UHGV-0175964_43	eggNOG-mapper	1041826.FCOL_05300	ParB-like nuclease domain	NA
UHGV-0175964_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0175964_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0175964_43	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0175964_44	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0175964_44	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0175964_44	UniRef90	UniRef90_A0A411ZUI0	NA	NA
UHGV-0175964_44	eggNOG-mapper	349741.Amuc_0783	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0175964_44	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0175964_44	Pfam	PF11922	NA	DUF3440
UHGV-0175964_44	COG	COG3969	NA	NA
UHGV-0175964_44	Structural annotation	PF11922, PF01507, MF_00063, NF006327, COG3969	NA	NA
UHGV-0175964_45	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0175964_45	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0175964_45	UniRef90	UniRef90_UPI00136ECC72	DEAD/DEAH box helicase	NA
UHGV-0175964_45	eggNOG-mapper	1206110.L0P6E9_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-0175964_45	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0175964_45	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0175964_45	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0175964_45	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0175964_46	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0175964_46	UniRef90	UniRef90_A0A072NSG6	NUMOD4 motif/HNH endonuclease	NA
UHGV-0175964_46	eggNOG-mapper	1208587.S6CQN3_9CAUD	HNH endonuclease	NA
UHGV-0175964_46	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0175964_46	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0175964_46	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0175964_46	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0175964_47	Structural annotation	PF20874	NA	NA
UHGV-0175964_55	PHROG	phrog_12732	NA	unknown function
UHGV-0175964_56	UniRef90	UniRef90_W1Q2J1	Methylase_S domain-containing protein	NA
UHGV-0175964_56	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0175964_56	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0175964_57	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0175964_57	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0175964_57	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-0175964_57	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0175964_57	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0175964_57	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0175964_57	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0175964_57	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0175964_58	PHROG	phrog_1065	NA	unknown function
UHGV-0175964_58	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0175964_60	PHROG	phrog_10105	NA	unknown function
UHGV-0175964_60	UniRef90	UniRef90_A0A128F0A6	NA	NA
UHGV-0175964_60	eggNOG-mapper	1266925.JHVX01000002_gene824	NA	NA