UHGV-0176011

Genome information

Genome length 16,676 bps

CDS count 24

Completeness 87.79% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176011
vOTU ID	vOTU-028861
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587420
BioSample	SAMN09781731
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.48
Jumbo phage	No

Genome content
Genome length	16,676 bps
GC content	53.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	95.13%
Average CDS length	662.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176011_6	Structural annotation	PF17548	NA	NA
UHGV-0176011_7	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176011_7	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0176011_7	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0176011_7	Structural annotation	PF17427	NA	NA
UHGV-0176011_9	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0176011_9	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0176011_9	UniRef90	UniRef90_A0A7S5V011	DNA-directed DNA polymerase	NA
UHGV-0176011_9	eggNOG-mapper	338473.A6XAD2_9CAUD	nucleotide binding	NA
UHGV-0176011_9	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0176011_9	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0176011_10	Pfam	PF12841	YvrJ protein family	YvrJ
UHGV-0176011_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0176011_11	PHROG	phrog_291	endolysin	lysis
UHGV-0176011_11	UniRef90	UniRef90_J9FII9	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-0176011_11	eggNOG-mapper	1437608.BBIA_0613	Glycosyl hydrolases family 25	NA
UHGV-0176011_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176011_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176011_11	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0176011_12	Structural annotation	PF16703	NA	NA
UHGV-0176011_14	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0176011_14	UniRef90	UniRef90_Q37888	Major capsid protein	NA
UHGV-0176011_14	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0176011_14	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176011_15	PHROG	phrog_2248	tail protein	tail
UHGV-0176011_15	UniRef90	UniRef90_A0A7S5V1W7	Major tail protein	NA
UHGV-0176011_15	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0176011_15	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0176011_15	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0176011_15	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0176011_16	PHROG	phrog_2038	upper collar connector	connector
UHGV-0176011_16	UniRef90	UniRef90_A0A514AAQ6	Upper collar protein	NA
UHGV-0176011_16	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0176011_16	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0176011_16	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0176011_17	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0176011_20	PHROG	phrog_9625	NA	unknown function
UHGV-0176011_20	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0176011_21	Structural annotation	PF08931	NA	NA
UHGV-0176011_22	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0176011_22	PHROG	phrog_1015	tail protein with lysin activity	tail
UHGV-0176011_22	UniRef90	UniRef90_A0A6G5XVW6	NlpC/P60 domain-containing protein	NA
UHGV-0176011_22	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0176011_22	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0176011_22	Structural annotation	NF008096, COG0791	NA	NA
UHGV-0176011_23	PHROG	phrog_2150	terminase	head and packaging
UHGV-0176011_23	UniRef90	UniRef90_A0A8D6UBB2	Encapsidation protein	NA
UHGV-0176011_23	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0176011_23	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0176011_23	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA