UHGV-0176022

Genome information

Genome length 38,176 bps

CDS count 61

Completeness 90.59% (high-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176022
vOTU ID	vOTU-067475
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589346
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.96
Jumbo phage	No

Genome content
Genome length	38,176 bps
GC content	55.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.89%
Average CDS length	584.95 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176022_1	PHROG	phrog_27197	NA	unknown function
UHGV-0176022_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0176022_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0176022_1	Structural annotation	NF007410	NA	NA
UHGV-0176022_2	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0176022_3	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0176022_4	Structural annotation	PF09537	NA	NA
UHGV-0176022_6	Structural annotation	PF14120	NA	NA
UHGV-0176022_7	PHROG	phrog_674	NA	unknown function
UHGV-0176022_7	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0176022_7	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-0176022_7	Pfam	PF07083	NA	DUF1351
UHGV-0176022_7	Structural annotation	PF07083	NA	NA
UHGV-0176022_8	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176022_8	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-0176022_8	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0176022_8	Pfam	PF03837	RecT family	RecT
UHGV-0176022_8	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0176022_8	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0176022_8	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0176022_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176022_9	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0176022_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176022_9	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0176022_10	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0176022_10	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176022_10	UniRef90	UniRef90_A0A844D5V0	DnaD domain protein	NA
UHGV-0176022_10	eggNOG-mapper	1111454.HMPREF1250_0280	NA	NA
UHGV-0176022_10	Pfam	PF19808	NA	DUF6291
UHGV-0176022_10	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0176022_10	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0176022_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176022_10	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0176022_11	Structural annotation	PF11417	NA	NA
UHGV-0176022_16	PHROG	phrog_7711	NA	unknown function
UHGV-0176022_16	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0176022_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0176022_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176022_17	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176022_17	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0176022_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0176022_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176022_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0176022_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176022_19	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0176022_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176022_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176022_20	UniRef90	UniRef90_A0A1Y4ES07	Terminase	NA
UHGV-0176022_20	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0176022_20	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0176022_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176022_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176022_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176022_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176022_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176022_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176022_21	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0176022_21	eggNOG-mapper	1423754.BALY01000011_gene289	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176022_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176022_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0176022_22	Pfam	PF04448	NA	DUF551
UHGV-0176022_23	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0176022_23	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0176022_23	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0176022_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176022_23	COG	COG2369	NA	NA
UHGV-0176022_23	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176022_24	PHROG	phrog_21498	NA	unknown function
UHGV-0176022_24	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0176022_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176022_24	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0176022_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176022_25	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0176022_25	eggNOG-mapper	268407.PWYN_03010	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0176022_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176022_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0176022_26	Structural annotation	PF06810	NA	NA
UHGV-0176022_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176022_27	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0176022_27	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0176022_27	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0176022_29	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0176022_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176022_30	Structural annotation	PF13554	NA	NA
UHGV-0176022_31	PHROG	phrog_885	major tail protein	tail
UHGV-0176022_31	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0176022_31	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176022_34	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0176022_34	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0176022_34	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0176022_34	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176022_34	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176022_34	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176022_34	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176022_35	UniRef90	UniRef90_A0A417USV5	MtfA protein	NA
UHGV-0176022_35	eggNOG-mapper	1123075.AUDP01000020_gene1523	phage tail	NA
UHGV-0176022_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176022_35	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0176022_36	PHROG	phrog_3558	tail protein	tail
UHGV-0176022_36	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0176022_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176022_36	COG	COG4926	Phage-related protein	NA
UHGV-0176022_36	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0176022_38	PHROG	phrog_2310	NA	unknown function
UHGV-0176022_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0176022_39	PHROG	phrog_291	endolysin	lysis
UHGV-0176022_39	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0176022_39	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0176022_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176022_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176022_39	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0176022_41	PHROG	phrog_15303	NA	unknown function
UHGV-0176022_42	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0176022_42	Structural annotation	PF10651	NA	NA
UHGV-0176022_45	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0176022_46	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176022_46	UniRef90	UniRef90_UPI001C0BF339	transcriptional regulator	NA
UHGV-0176022_46	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-0176022_46	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0176022_47	PHROG	phrog_25567	NA	unknown function
UHGV-0176022_47	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0176022_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176022_47	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0176022_49	PHROG	phrog_3754	NA	unknown function
UHGV-0176022_49	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0176022_50	PHROG	phrog_21718	NA	unknown function
UHGV-0176022_50	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176022_51	PHROG	phrog_22984	NA	unknown function
UHGV-0176022_52	PHROG	phrog_16490	NA	unknown function
UHGV-0176022_52	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0176022_53	PHROG	phrog_20016	NA	unknown function
UHGV-0176022_53	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0176022_53	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0176022_53	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176022_54	Structural annotation	PF12510	NA	NA
UHGV-0176022_56	KOfam	K14059	int; integrase	NA
UHGV-0176022_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0176022_56	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0176022_56	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0176022_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176022_56	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0176022_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0176022_57	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0176022_57	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0176022_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176022_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176022_57	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0176022_60	PHROG	phrog_888	NA	unknown function
UHGV-0176022_60	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0176022_60	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0176022_60	Pfam	PF14471	NA	DUF4428
UHGV-0176022_60	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0176022_60	Structural annotation	PF15947, PF14471	NA	NA