UHGV-0176046

Genome information

Genome length 33,448 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176046
vOTU ID	vOTU-004787
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_559364
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.62
Jumbo phage	No

Genome content
Genome length	33,448 bps
GC content	62.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.50%
Average CDS length	603.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176046_1	KOfam	K14059	int; integrase	NA
UHGV-0176046_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0176046_1	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0176046_1	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0176046_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176046_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176046_1	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0176046_3	UniRef90	UniRef90_A0A7X3ASF1	XRE family transcriptional regulator	NA
UHGV-0176046_3	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0176046_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176046_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0176046_3	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0176046_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176046_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176046_5	UniRef90	UniRef90_A0A1Y3SLP5	HTH cro/C1-type domain-containing protein	NA
UHGV-0176046_5	eggNOG-mapper	1410650.JHWL01000004_gene1768	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176046_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176046_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176046_6	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0176046_6	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0176046_6	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0176046_7	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0176046_7	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0176046_7	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176046_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0176046_7	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0176046_7	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0176046_9	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176046_9	UniRef90	UniRef90_UPI001EE1549C	helix-turn-helix domain-containing protein	NA
UHGV-0176046_9	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0176046_9	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0176046_9	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0176046_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0176046_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0176046_10	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0176046_10	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0176046_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0176046_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0176046_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176046_10	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0176046_11	PHROG	phrog_27610	NA	unknown function
UHGV-0176046_12	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0176046_12	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0176046_12	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-0176046_12	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0176046_12	Pfam	PF13614	AAA domain	AAA_31
UHGV-0176046_12	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0176046_12	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0176046_13	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0176046_13	PHROG	phrog_27290	NA	unknown function
UHGV-0176046_13	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0176046_13	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0176046_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176046_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176046_13	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0176046_16	PHROG	phrog_38832	NA	unknown function
UHGV-0176046_16	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0176046_16	Structural annotation	PF07073	NA	NA
UHGV-0176046_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176046_20	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0176046_20	Structural annotation	PF11726	NA	NA
UHGV-0176046_22	PHROG	phrog_21498	NA	unknown function
UHGV-0176046_22	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0176046_22	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0176046_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0176046_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176046_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176046_22	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0176046_23	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0176046_23	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0176046_23	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0176046_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0176046_23	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0176046_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0176046_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0176046_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176046_24	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0176046_24	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0176046_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0176046_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0176046_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176046_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0176046_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176046_26	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0176046_26	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0176046_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176046_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0176046_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176046_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0176046_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0176046_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0176046_27	UniRef90	UniRef90_UPI00124513AA	Clp protease ClpP	NA
UHGV-0176046_27	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-0176046_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0176046_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0176046_27	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0176046_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176046_28	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0176046_28	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0176046_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176046_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176046_28	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176046_29	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-0176046_29	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-0176046_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0176046_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0176046_30	PHROG	phrog_25	head closure Hc1	connector
UHGV-0176046_30	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0176046_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0176046_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0176046_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0176046_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176046_31	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0176046_31	Structural annotation	PF05657	NA	NA
UHGV-0176046_32	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0176046_32	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0176046_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0176046_32	Structural annotation	TIGR01725	NA	NA
UHGV-0176046_33	PHROG	phrog_88	major tail protein	tail
UHGV-0176046_33	eggNOG-mapper	1519439.JPJG01000037_gene949	phage major tail protein, phi13 family	NA
UHGV-0176046_33	COG	COG5492	NA	NA
UHGV-0176046_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0176046_34	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0176046_35	PHROG	phrog_23464	NA	unknown function
UHGV-0176046_35	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0176046_35	COG	COG5412	Phage-related protein	NA
UHGV-0176046_35	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0176046_37	PHROG	phrog_32744	NA	unknown function
UHGV-0176046_37	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0176046_37	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0176046_38	UniRef90	UniRef90_A0A4D7AHL6	Collagen-like protein	NA
UHGV-0176046_38	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0176046_39	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-0176046_40	PHROG	phrog_134	NA	unknown function
UHGV-0176046_40	UniRef90	UniRef90_A0A6G3M4W0	XkdX family protein	NA
UHGV-0176046_40	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0176046_40	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0176046_40	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0176046_42	PHROG	phrog_4105	NA	unknown function
UHGV-0176046_44	PHROG	phrog_881	holin	lysis
UHGV-0176046_44	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0176046_44	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0176046_44	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0176046_44	Structural annotation	PF16938	NA	NA
UHGV-0176046_45	PHROG	phrog_21357	endolysin	lysis
UHGV-0176046_45	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0176046_45	eggNOG-mapper	1007096.BAGW01000022_gene2648	CHAP domain	NA
UHGV-0176046_45	Pfam	PF05257	CHAP domain	CHAP
UHGV-0176046_45	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0176046_45	Structural annotation	TIGR02594	NA	NA
UHGV-0176046_46	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0176046_46	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0176046_49	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176046_51	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0176046_51	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA