UHGV-0176047

Genome information

Genome length 53,082 bps

CDS count 70

Completeness 99.78% (high-quality)

geNomad score 0.9326

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176047
vOTU ID	vOTU-008064
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591342
BioSample	SAMN09781712
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9326
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.14
Jumbo phage	No

Genome content
Genome length	53,082 bps
GC content	30.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	87.32%
Average CDS length	665.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176047_1	PHROG	phrog_12892	NA	unknown function
UHGV-0176047_1	eggNOG-mapper	634498.mru_0270	NA	NA
UHGV-0176047_1	Pfam	PF07362	Post-segregation antitoxin CcdA	CcdA
UHGV-0176047_2	KOfam	K10726	mcm; replicative DNA helicase Mcm [EC:5.6.2.3]	NA
UHGV-0176047_2	PHROG	phrog_10371	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0176047_2	UniRef90	UniRef90_A0A843EN66	Minichromosome maintenance protein MCM	NA
UHGV-0176047_2	eggNOG-mapper	634498.mru_0269	Belongs to the MCM family	NA
UHGV-0176047_2	Pfam	PF14551	MCM N-terminal domain	MCM_N
UHGV-0176047_2	Pfam	PF17207	MCM OB domain	MCM_OB
UHGV-0176047_2	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0176047_2	Pfam	PF21120	Archaeal MCM, winged-helix	MCM_WH_arc
UHGV-0176047_2	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0176047_3	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176047_3	UniRef90	UniRef90_UPI00036BA6E3	ERF family protein	NA
UHGV-0176047_3	eggNOG-mapper	936572.HMPREF1148_0677	ERF superfamily	NA
UHGV-0176047_3	Pfam	PF04404	ERF superfamily	ERF
UHGV-0176047_3	Structural annotation	PF04404, PF14178	NA	NA
UHGV-0176047_4	PHROG	phrog_14747	NA	unknown function
UHGV-0176047_4	Structural annotation	PF10298	NA	NA
UHGV-0176047_5	PHROG	phrog_12619	NA	unknown function
UHGV-0176047_6	PHROG	phrog_13208	NA	unknown function
UHGV-0176047_6	Structural annotation	PF10298	NA	NA
UHGV-0176047_7	PHROG	phrog_12557	NA	unknown function
UHGV-0176047_8	eggNOG-mapper	420247.Msm_1647	NA	NA
UHGV-0176047_9	UniRef90	UniRef90_A0A7C6H629	STAS-like domain-containing protein	NA
UHGV-0176047_9	eggNOG-mapper	339860.Msp_0707	NA	NA
UHGV-0176047_10	PHROG	phrog_3364	NA	unknown function
UHGV-0176047_10	UniRef90	UniRef90_A0A843IUI7	Sensor histidine kinase	NA
UHGV-0176047_10	eggNOG-mapper	339860.Msp_0706	NA	NA
UHGV-0176047_10	Structural annotation	PF02518, MF_00637, TIGR01925, COG2172	NA	NA
UHGV-0176047_11	eggNOG-mapper	224719.Abm4_1051	NA	NA
UHGV-0176047_12	UniRef90	UniRef90_UPI0003773054	NA	NA
UHGV-0176047_12	eggNOG-mapper	386456.JQKN01000007_gene3282	NA	NA
UHGV-0176047_12	Pfam	PF10049	NA	DUF2283
UHGV-0176047_13	UniRef90	UniRef90_A0A7J4K7T2	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0176047_13	eggNOG-mapper	456442.Mboo_0403	NA	NA
UHGV-0176047_15	UniRef90	UniRef90_A0A832X7W4	TIGR04255 family protein	NA
UHGV-0176047_15	NCBIFam	TIGR04255.1	TIGR04255 family protein	NA
UHGV-0176047_15	Structural annotation	PF08680, MF_00408, TIGR04255, COG2101	NA	NA
UHGV-0176047_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0176047_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0176047_16	UniRef90	UniRef90_A5UNR7	DNA intergrase/recombinase, phage integrase family	NA
UHGV-0176047_16	eggNOG-mapper	420247.Msm_1640	Phage integrase family	NA
UHGV-0176047_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176047_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176047_16	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0176047_17	eggNOG-mapper	756067.MicvaDRAFT_0142	HEPN domain	NA
UHGV-0176047_19	UniRef90	UniRef90_A0A1H4AH34	TIGR04255 family protein	NA
UHGV-0176047_19	NCBIFam	TIGR04255.1	TIGR04255 family protein	NA
UHGV-0176047_19	Structural annotation	PF08680, MF_00408, TIGR04255, COG2101	NA	NA
UHGV-0176047_21	Structural annotation	PF09388	NA	NA
UHGV-0176047_22	UniRef90	UniRef90_A0A328S1A6	PG_binding_1 domain-containing protein	NA
UHGV-0176047_22	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-0176047_23	KOfam	K13663	gumF; acyltransferase [EC:2.3.1.-]	NA
UHGV-0176047_23	PHROG	phrog_3333	O-acetyltransferase	other
UHGV-0176047_23	UniRef90	UniRef90_D3E1E5	Acyl_transf_3 domain-containing protein	NA
UHGV-0176047_23	eggNOG-mapper	634498.mru_2180	Acyltransferase family	NA
UHGV-0176047_23	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0176047_23	COG	COG3274	Surface polysaccharide O-acyltransferase WecH	NA
UHGV-0176047_23	Structural annotation	PF01757, MF_01949, NF003014, COG3274	NA	NA
UHGV-0176047_24	eggNOG-mapper	420247.Msm_1688	NA	NA
UHGV-0176047_24	Pfam	PF12789	Phage tail repeat like	PTR
UHGV-0176047_26	PHROG	phrog_19695	NA	unknown function
UHGV-0176047_27	eggNOG-mapper	420247.Msm_1689	NA	NA
UHGV-0176047_27	Structural annotation	PF16640, NF032891	NA	NA
UHGV-0176047_29	Structural annotation	PF12571	NA	NA
UHGV-0176047_31	UniRef90	UniRef90_A0A843IHA5	Ig-like domain repeat protein	NA
UHGV-0176047_32	PHROG	phrog_6	baseplate protein	tail
UHGV-0176047_32	UniRef90	UniRef90_A0A843FFH9	Baseplate J/gp47 family protein	NA
UHGV-0176047_32	eggNOG-mapper	478749.BRYFOR_07629	baseplate J-like protein	NA
UHGV-0176047_32	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0176047_32	COG	COG3299	NA	NA
UHGV-0176047_33	Pfam	PF10934	NA	DUF2634
UHGV-0176047_36	UniRef90	UniRef90_A0A843F863	Transglutaminase domain-containing protein	NA
UHGV-0176047_36	Pfam	PF01841	Transglutaminase-like superfamily	Transglut_core
UHGV-0176047_38	PHROG	phrog_38386	NA	unknown function
UHGV-0176047_38	eggNOG-mapper	634498.mru_0315	NA	NA
UHGV-0176047_38	Pfam	PF17107	N-terminal domain on NACHT_NTPase and P-loop NTPases	SesA
UHGV-0176047_42	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0176047_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176047_45	UniRef90	UniRef90_A0A843F4C1	HK97 gp10 family phage protein	NA
UHGV-0176047_45	eggNOG-mapper	591487.B9W1E8_9CAUD	NA	NA
UHGV-0176047_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176047_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176047_47	Structural annotation	PF20387, TIGR02215	NA	NA
UHGV-0176047_48	UniRef90	UniRef90_A0A843GCW4	Carboxypeptidase regulatory-like domain-containing protein	NA
UHGV-0176047_49	Pfam	PF17802	Prealbumin-like fold domain	SpaA
UHGV-0176047_50	KOfam	K06904	NA	NA
UHGV-0176047_50	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0176047_50	UniRef90	UniRef90_A0A162FDD0	Caudovirus prohead protease	NA
UHGV-0176047_50	eggNOG-mapper	224719.Abm4_1060	NA	NA
UHGV-0176047_50	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0176047_54	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0176047_54	UniRef90	UniRef90_A0A843FFE9	Minor capsid protein	NA
UHGV-0176047_54	eggNOG-mapper	123214.PERMA_1777	cell adhesion	NA
UHGV-0176047_54	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176047_54	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0176047_54	COG	COG2369	NA	NA
UHGV-0176047_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176047_55	UniRef90	UniRef90_A0A843F333	Phage portal protein	NA
UHGV-0176047_55	eggNOG-mapper	105425.BBPL01000001_gene6251	Portal protein	NA
UHGV-0176047_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176047_55	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176047_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176047_56	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0176047_56	UniRef90	UniRef90_A0A1H7I7W4	Phage terminase, large subunit, PBSX family	NA
UHGV-0176047_56	eggNOG-mapper	546271.Selsp_1338	Phage terminase, large subunit, PBSX family	NA
UHGV-0176047_56	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176047_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176047_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176047_56	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176047_58	PHROG	phrog_14654	NA	unknown function
UHGV-0176047_59	PHROG	phrog_13825	NA	unknown function
UHGV-0176047_60	PHROG	phrog_17221	NA	unknown function
UHGV-0176047_63	PHROG	phrog_13750	NA	unknown function
UHGV-0176047_63	eggNOG-mapper	420247.Msm_1665	NA	NA
UHGV-0176047_64	PHROG	phrog_12416	NA	unknown function
UHGV-0176047_65	PHROG	phrog_12317	NA	unknown function
UHGV-0176047_65	Structural annotation	PF10400	NA	NA
UHGV-0176047_66	PHROG	phrog_12701	NA	unknown function
UHGV-0176047_68	UniRef90	UniRef90_A5UNT8	ASCH domain-containing protein	NA
UHGV-0176047_68	eggNOG-mapper	420247.Msm_1661	ASCH domain	NA
UHGV-0176047_68	Pfam	PF04266	ASCH domain	ASCH
UHGV-0176047_68	COG	COG2411	Predicted RNA-binding protein, contains PUA-like ASCH domain	NA
UHGV-0176047_68	Structural annotation	PF04266, MF_00684, NF003443, COG2411	NA	NA
UHGV-0176047_70	PHROG	phrog_13722	NA	unknown function
UHGV-0176047_70	UniRef90	UniRef90_UPI000364F6FD	MarR family transcriptional regulator	NA