UHGV-0176051

Genome information

Genome length 37,952 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176051
vOTU ID	vOTU-006313
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591336
BioSample	SAMN09781712
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.08
Jumbo phage	No

Genome content
Genome length	37,952 bps
GC content	54.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.74%
Average CDS length	679.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176051_3	PHROG	phrog_13879	NA	unknown function
UHGV-0176051_3	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0176051_3	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0176051_4	PHROG	phrog_1194	NA	unknown function
UHGV-0176051_4	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0176051_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0176051_5	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0176051_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176051_5	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0176051_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176051_8	PHROG	phrog_706	NA	unknown function
UHGV-0176051_8	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0176051_8	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0176051_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176051_8	Structural annotation	PF06854	NA	NA
UHGV-0176051_9	PHROG	phrog_11299	NA	unknown function
UHGV-0176051_9	Structural annotation	PF10666	NA	NA
UHGV-0176051_10	PHROG	phrog_3099	NA	unknown function
UHGV-0176051_10	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0176051_10	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0176051_11	Structural annotation	PF12691	NA	NA
UHGV-0176051_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176051_12	eggNOG-mapper	632245.CLP_1652	Minor capsid protein	NA
UHGV-0176051_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176051_12	Structural annotation	PF11114	NA	NA
UHGV-0176051_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176051_15	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0176051_15	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0176051_15	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176051_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176051_16	UniRef90	UniRef90_U1FQG8	Phage minor structural protein GP20	NA
UHGV-0176051_16	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0176051_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176051_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176051_19	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0176051_19	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0176051_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176051_19	COG	COG2369	NA	NA
UHGV-0176051_19	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0176051_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176051_20	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176051_20	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0176051_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176051_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176051_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176051_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176051_21	UniRef90	UniRef90_A0A1Y3SII8	Terminase	NA
UHGV-0176051_21	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0176051_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176051_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176051_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176051_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176051_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176051_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176051_23	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0176051_23	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0176051_23	Structural annotation	PF02996	NA	NA
UHGV-0176051_24	PHROG	phrog_7566	NA	unknown function
UHGV-0176051_24	UniRef90	UniRef90_A0A412EXQ2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0176051_24	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0176051_25	PHROG	phrog_23660	NA	unknown function
UHGV-0176051_25	eggNOG-mapper	1226322.HMPREF1545_03534	NA	NA
UHGV-0176051_26	PHROG	phrog_3136	NA	unknown function
UHGV-0176051_26	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0176051_26	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0176051_26	Pfam	PF04266	ASCH domain	ASCH
UHGV-0176051_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0176051_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0176051_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0176051_27	UniRef90	UniRef90_A0A0U1L2E6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0176051_27	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-0176051_27	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0176051_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0176051_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176051_27	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0176051_28	KOfam	K24451	zim; modification methylase	NA
UHGV-0176051_28	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0176051_28	UniRef90	UniRef90_A0A845MWG4	Methyltransferase	NA
UHGV-0176051_28	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0176051_28	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0176051_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0176051_28	COG	COG0863	DNA modification methylase	NA
UHGV-0176051_28	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0176051_29	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0176051_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0176051_29	UniRef90	UniRef90_A0A845MVG4	Helicase	NA
UHGV-0176051_29	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0176051_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0176051_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0176051_29	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-0176051_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0176051_30	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0176051_30	UniRef90	UniRef90_A0A2V2FQV6	ParB domain-containing protein	NA
UHGV-0176051_30	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0176051_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176051_30	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0176051_30	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0176051_30	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0176051_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176051_31	UniRef90	UniRef90_A0A2V2FY53	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176051_31	eggNOG-mapper	272563.CD630_09360	Endodeoxyribonuclease RusA	NA
UHGV-0176051_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0176051_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176051_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0176051_32	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0176051_32	UniRef90	UniRef90_A0A2V2FW01	Phage_rep_org_N domain-containing protein	NA
UHGV-0176051_32	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0176051_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0176051_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176051_32	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0176051_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176051_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176051_33	UniRef90	UniRef90_A0A2V2F5W5	Single-stranded DNA-binding protein	NA
UHGV-0176051_33	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-0176051_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176051_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176051_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176051_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176051_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0176051_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0176051_35	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0176051_35	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0176051_35	Structural annotation	PF05772	NA	NA
UHGV-0176051_36	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0176051_36	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0176051_37	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176051_37	UniRef90	UniRef90_A0A7X7IIE7	AAA family ATPase	NA
UHGV-0176051_37	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0176051_37	Pfam	PF13479	AAA domain	AAA_24
UHGV-0176051_37	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0176051_37	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0176051_40	PHROG	phrog_7338	NA	unknown function
UHGV-0176051_40	UniRef90	UniRef90_A0A6N7X0G0	Helix-turn-helix domain-containing protein	NA
UHGV-0176051_40	eggNOG-mapper	742738.HMPREF9460_02489	Helix-turn-helix domain	NA
UHGV-0176051_40	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0176051_40	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0176051_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176051_42	UniRef90	UniRef90_A0A2V2F4F9	Transcriptional regulator	NA
UHGV-0176051_42	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0176051_42	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0176051_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0176051_43	PHROG	phrog_1914	NA	unknown function
UHGV-0176051_43	UniRef90	UniRef90_A0A2V2EYS6	Peptidase_M78 domain-containing protein	NA
UHGV-0176051_43	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0176051_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0176051_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0176051_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0176051_44	KOfam	K14059	int; integrase	NA
UHGV-0176051_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0176051_44	UniRef90	UniRef90_UPI001F33A9B4	site-specific integrase	NA
UHGV-0176051_44	eggNOG-mapper	693746.OBV_34810	Belongs to the 'phage' integrase family	NA
UHGV-0176051_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0176051_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176051_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176051_44	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0176051_45	UniRef90	UniRef90_A0A8E8ECD3	Helix-turn-helix domain-containing protein	NA
UHGV-0176051_45	eggNOG-mapper	471875.RUMLAC_02311	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176051_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176051_45	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0176051_48	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0176051_49	KOfam	K01371	CTSK; cathepsin K [EC:3.4.22.38]	NA
UHGV-0176051_49	PHROG	phrog_20388	endolysin	lysis
UHGV-0176051_49	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176051_49	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0176051_49	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-0176051_49	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0176051_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176051_49	Structural annotation	PF18013, PF01510, PF18342, MF_04111, NF008758, NF041850, COG3023, COG3807	NA	NA
UHGV-0176051_50	PHROG	phrog_4105	NA	unknown function
UHGV-0176051_50	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0176051_51	PHROG	phrog_19695	NA	unknown function
UHGV-0176051_51	eggNOG-mapper	476272.RUMHYD_01995	NA	NA
UHGV-0176051_51	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5