UHGV-0176064

Genome information

Genome length 21,505 bps

CDS count 31

Completeness 53.99% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176064
vOTU ID	vOTU-028865
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591619
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.57
Jumbo phage	No

Genome content
Genome length	21,505 bps
GC content	55.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	92.56%
Average CDS length	647.13 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176064_2	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0176064_5	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0176064_5	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0176064_5	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0176064_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176064_5	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0176064_6	PHROG	phrog_3136	NA	unknown function
UHGV-0176064_6	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0176064_6	eggNOG-mapper	502025.Hoch_0947	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0176064_6	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0176064_6	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0176064_7	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0176064_7	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176064_7	UniRef90	UniRef90_A0A844DBG8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176064_7	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0176064_7	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176064_7	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0176064_8	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0176064_9	Structural annotation	PF17599, PF14282, NF011879	NA	NA
UHGV-0176064_11	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0176064_13	PHROG	phrog_2412	NA	unknown function
UHGV-0176064_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176064_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0176064_14	UniRef90	UniRef90_A0A3A6EEP8	PBSX family phage terminase large subunit	NA
UHGV-0176064_14	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0176064_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176064_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176064_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176064_14	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176064_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176064_15	UniRef90	UniRef90_A0A291T9A9	Capsid protein	NA
UHGV-0176064_15	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0176064_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176064_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176064_16	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-0176064_16	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0176064_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176064_16	COG	COG2369	NA	NA
UHGV-0176064_16	Structural annotation	PF06152	NA	NA
UHGV-0176064_18	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0176064_18	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0176064_18	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0176064_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176064_19	UniRef90	UniRef90_A0A1C6FYX1	Phage minor structural protein GP20	NA
UHGV-0176064_19	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0176064_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176064_19	Structural annotation	PF06810	NA	NA
UHGV-0176064_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176064_20	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0176064_20	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0176064_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176064_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176064_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0176064_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176064_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176064_22	PHROG	phrog_3366	NA	unknown function
UHGV-0176064_22	Pfam	PF20536	NA	DUF6751
UHGV-0176064_22	Structural annotation	PF20536	NA	NA
UHGV-0176064_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176064_23	UniRef90	UniRef90_D4K441	Minor capsid	NA
UHGV-0176064_23	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0176064_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176064_23	Structural annotation	PF11114	NA	NA
UHGV-0176064_24	PHROG	phrog_3266	tail completion	connector
UHGV-0176064_24	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0176064_24	eggNOG-mapper	632245.CLP_1653	NA	NA
UHGV-0176064_24	Structural annotation	PF12691	NA	NA
UHGV-0176064_25	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0176064_25	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0176064_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0176064_26	PHROG	phrog_4450	NA	unknown function
UHGV-0176064_26	Structural annotation	PF20378	NA	NA
UHGV-0176064_27	PHROG	phrog_706	NA	unknown function
UHGV-0176064_27	UniRef90	UniRef90_UPI0011AF1F88	Gp15 family bacteriophage protein	NA
UHGV-0176064_27	eggNOG-mapper	663278.Ethha_0489	Bacteriophage Gp15 protein	NA
UHGV-0176064_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176064_27	Structural annotation	PF06854	NA	NA
UHGV-0176064_28	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0176064_28	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0176064_28	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0176064_28	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176064_28	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176064_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176064_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176064_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176064_29	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0176064_29	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0176064_30	PHROG	phrog_18110	NA	unknown function
UHGV-0176064_30	UniRef90	UniRef90_A0A1Y3TWK1	Prophage_tail domain-containing protein	NA
UHGV-0176064_30	eggNOG-mapper	272562.CA_C1879	Phage minor structural protein	NA
UHGV-0176064_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176064_30	COG	COG4926	Phage-related protein	NA
UHGV-0176064_30	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA