UHGV-0176097

Genome information

Genome length 30,229 bps

CDS count 46

Completeness 86.11% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176097
vOTU ID	vOTU-028873
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588249
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.56
Jumbo phage	No

Genome content
Genome length	30,229 bps
GC content	57.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.93%
Average CDS length	600.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176097_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0176097_1	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0176097_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0176097_1	COG	COG5484	NA	NA
UHGV-0176097_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0176097_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176097_2	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0176097_2	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0176097_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0176097_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0176097_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176097_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0176097_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176097_3	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0176097_3	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0176097_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176097_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0176097_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176097_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0176097_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0176097_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0176097_4	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0176097_4	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0176097_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0176097_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0176097_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0176097_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176097_5	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0176097_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0176097_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176097_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0176097_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176097_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0176097_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176097_6	PHROG	phrog_749	NA	unknown function
UHGV-0176097_6	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0176097_7	PHROG	phrog_19734	NA	unknown function
UHGV-0176097_7	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0176097_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0176097_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176097_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0176097_8	Structural annotation	PF05657	NA	NA
UHGV-0176097_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176097_9	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0176097_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0176097_9	Structural annotation	TIGR01725	NA	NA
UHGV-0176097_10	PHROG	phrog_88	major tail protein	tail
UHGV-0176097_10	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0176097_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0176097_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0176097_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0176097_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0176097_12	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0176097_12	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0176097_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0176097_12	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0176097_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176097_13	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0176097_13	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0176097_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176097_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0176097_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0176097_14	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0176097_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0176097_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176097_14	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0176097_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0176097_14	COG	COG4926	Phage-related protein	NA
UHGV-0176097_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0176097_15	PHROG	phrog_1863	NA	unknown function
UHGV-0176097_15	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0176097_16	PHROG	phrog_881	holin	lysis
UHGV-0176097_16	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0176097_16	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0176097_16	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0176097_16	Structural annotation	PF16938	NA	NA
UHGV-0176097_17	KOfam	K03749	dedD; DedD protein	NA
UHGV-0176097_17	PHROG	phrog_435	endolysin	lysis
UHGV-0176097_17	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176097_17	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0176097_17	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0176097_17	Pfam	PF05036	SPOR domain	SPOR
UHGV-0176097_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176097_17	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0176097_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176097_20	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0176097_20	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176097_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176097_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176097_20	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0176097_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0176097_22	PHROG	phrog_95	integrase	integration and excision
UHGV-0176097_22	UniRef90	UniRef90_A0A352ULE7	Recombinase family protein	NA
UHGV-0176097_22	eggNOG-mapper	1120746.CCNL01000010_gene1415	recombinase activity	NA
UHGV-0176097_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0176097_22	Pfam	PF07508	Recombinase	Recombinase
UHGV-0176097_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0176097_22	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0176097_23	UniRef90	UniRef90_A0A3D1I232	zinc_ribbon_2 domain-containing protein	NA
UHGV-0176097_23	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0176097_24	UniRef90	UniRef90_U2R3K7	HTH cro/C1-type domain-containing protein	NA
UHGV-0176097_24	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0176097_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176097_24	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0176097_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176097_25	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0176097_25	UniRef90	UniRef90_UPI001D013835	helix-turn-helix domain-containing protein	NA
UHGV-0176097_25	eggNOG-mapper	1410650.JHWL01000006_gene1493	sequence-specific DNA binding	NA
UHGV-0176097_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176097_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176097_25	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0176097_27	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0176097_27	UniRef90	UniRef90_UPI001BB4836B	helix-turn-helix domain-containing protein	NA
UHGV-0176097_27	eggNOG-mapper	742738.HMPREF9460_04043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176097_27	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0176097_27	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0176097_27	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0176097_28	Structural annotation	PF21327	NA	NA
UHGV-0176097_30	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176097_30	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0176097_30	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0176097_30	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0176097_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176097_30	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0176097_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0176097_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0176097_31	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0176097_31	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0176097_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0176097_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0176097_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176097_31	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0176097_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0176097_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0176097_32	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0176097_32	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0176097_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0176097_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0176097_32	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0176097_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0176097_33	PHROG	phrog_27290	NA	unknown function
UHGV-0176097_33	UniRef90	UniRef90_A0A3D4EJM0	Chromosome partitioning protein ParB	NA
UHGV-0176097_33	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0176097_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176097_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176097_33	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0176097_35	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0176097_38	PHROG	phrog_38832	NA	unknown function
UHGV-0176097_38	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0176097_40	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0176097_40	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0176097_40	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0176097_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176097_44	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0176097_44	Structural annotation	PF11726	NA	NA
UHGV-0176097_45	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0176097_45	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0176097_45	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0176097_45	Structural annotation	PF14205	NA	NA
UHGV-0176097_46	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176097_46	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0176097_46	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0176097_46	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0176097_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA