UHGV-0176125

Genome information

Genome length 26,853 bps

CDS count 46

Completeness 63.57% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176125
vOTU ID	vOTU-028877
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581128
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.53
Jumbo phage	No

Genome content
Genome length	26,853 bps
GC content	54.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.32%
Average CDS length	536.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176125_1	PHROG	phrog_17977	NA	unknown function
UHGV-0176125_1	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0176125_2	Structural annotation	PF13554	NA	NA
UHGV-0176125_3	PHROG	phrog_885	major tail protein	tail
UHGV-0176125_3	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0176125_3	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176125_6	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0176125_6	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0176125_6	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0176125_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176125_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176125_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176125_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176125_7	UniRef90	UniRef90_A0A7G9WF98	MtfA protein	NA
UHGV-0176125_7	eggNOG-mapper	1123075.AUDP01000020_gene1523	phage tail	NA
UHGV-0176125_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176125_7	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0176125_8	PHROG	phrog_3558	tail protein	tail
UHGV-0176125_8	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0176125_8	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0176125_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176125_8	COG	COG4926	Phage-related protein	NA
UHGV-0176125_8	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0176125_9	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0176125_9	UniRef90	UniRef90_UPI001D0EF571	Ig-like domain-containing protein	NA
UHGV-0176125_9	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0176125_9	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0176125_9	COG	COG5492	NA	NA
UHGV-0176125_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0176125_11	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0176125_11	PHROG	phrog_17147	NA	unknown function
UHGV-0176125_11	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0176125_11	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0176125_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0176125_12	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-0176125_13	PHROG	phrog_1382	NA	unknown function
UHGV-0176125_13	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0176125_14	KOfam	K07273	acm; lysozyme	NA
UHGV-0176125_14	PHROG	phrog_291	endolysin	lysis
UHGV-0176125_14	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0176125_14	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0176125_14	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176125_14	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176125_14	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0176125_16	PHROG	phrog_15303	NA	unknown function
UHGV-0176125_17	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-0176125_20	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0176125_20	Pfam	PF09274	ParG	ParG
UHGV-0176125_21	PHROG	phrog_3754	NA	unknown function
UHGV-0176125_21	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0176125_22	PHROG	phrog_21718	NA	unknown function
UHGV-0176125_22	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176125_23	PHROG	phrog_22984	NA	unknown function
UHGV-0176125_24	PHROG	phrog_16490	NA	unknown function
UHGV-0176125_24	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0176125_26	PHROG	phrog_20016	NA	unknown function
UHGV-0176125_26	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0176125_26	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0176125_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176125_27	Structural annotation	PF12510	NA	NA
UHGV-0176125_29	KOfam	K14059	int; integrase	NA
UHGV-0176125_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0176125_29	UniRef90	UniRef90_UPI0012DD7FDB	site-specific integrase	NA
UHGV-0176125_29	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0176125_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176125_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0176125_29	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0176125_30	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0176125_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176125_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176125_30	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176125_33	PHROG	phrog_888	NA	unknown function
UHGV-0176125_33	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0176125_33	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0176125_33	Pfam	PF14471	NA	DUF4428
UHGV-0176125_33	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0176125_33	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0176125_34	eggNOG-mapper	394503.Ccel_2974	NA	NA
UHGV-0176125_34	Structural annotation	COG5342	NA	NA
UHGV-0176125_37	Pfam	PF09106	Elongation factor SelB, winged helix	SelB-wing_2
UHGV-0176125_37	Structural annotation	PF09202, MF_01819, NF041230, COG1321	NA	NA
UHGV-0176125_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176125_38	UniRef90	UniRef90_UPI001966F1BB	helix-turn-helix transcriptional regulator	NA
UHGV-0176125_38	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0176125_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176125_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176125_38	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0176125_39	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0176125_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176125_39	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0176125_42	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0176125_42	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-0176125_42	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0176125_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176125_42	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0176125_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0176125_42	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0176125_46	PHROG	phrog_4433	NA	unknown function
UHGV-0176125_46	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0176125_46	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0176125_46	Structural annotation	NF000318	NA	NA