UHGV-0176128

Genome information

Genome length 25,478 bps

CDS count 42

Completeness 60.40% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176128
vOTU ID	vOTU-028879
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581131
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.24
Jumbo phage	No

Genome content
Genome length	25,478 bps
GC content	56.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.46%
Average CDS length	570.86 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176128_1	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0176128_1	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176128_1	UniRef90	UniRef90_UPI0018CC28AD	DnaD domain protein	NA
UHGV-0176128_1	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0176128_1	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0176128_1	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0176128_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176128_2	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0176128_5	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0176128_5	UniRef90	UniRef90_A0A009YR05	Putative gp12	NA
UHGV-0176128_5	eggNOG-mapper	1291050.JAGE01000001_gene2906	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0176128_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176128_5	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0176128_7	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0176128_7	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176128_7	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176128_7	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0176128_7	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0176128_7	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176128_7	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0176128_9	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0176128_10	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0176128_10	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0176128_10	Structural annotation	PF04218	NA	NA
UHGV-0176128_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176128_11	PHROG	phrog_10250	NA	unknown function
UHGV-0176128_11	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0176128_11	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0176128_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176128_11	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0176128_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176128_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176128_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176128_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176128_12	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0176128_12	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176128_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176128_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0176128_13	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0176128_13	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0176128_13	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0176128_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176128_13	COG	COG2369	NA	NA
UHGV-0176128_13	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176128_14	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0176128_14	UniRef90	UniRef90_A0A2V2FGW5	XRE family transcriptional regulator	NA
UHGV-0176128_14	eggNOG-mapper	1378168.N510_01451	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0176128_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0176128_14	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0176128_16	Structural annotation	PF07342	NA	NA
UHGV-0176128_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176128_17	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0176128_17	UniRef90	UniRef90_UPI001C128E30	phage antirepressor KilAC domain-containing protein	NA
UHGV-0176128_17	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0176128_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176128_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176128_17	COG	COG3617	Prophage antirepressor	NA
UHGV-0176128_17	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0176128_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176128_18	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0176128_18	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0176128_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176128_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0176128_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176128_21	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0176128_21	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0176128_21	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0176128_23	PHROG	phrog_17977	NA	unknown function
UHGV-0176128_23	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0176128_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176128_24	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0176128_24	Structural annotation	PF13554	NA	NA
UHGV-0176128_25	PHROG	phrog_885	major tail protein	tail
UHGV-0176128_25	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0176128_25	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176128_28	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0176128_28	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0176128_28	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0176128_28	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176128_28	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176128_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176128_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176128_29	PHROG	phrog_3558	tail protein	tail
UHGV-0176128_29	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0176128_29	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-0176128_29	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176128_29	COG	COG4926	Phage-related protein	NA
UHGV-0176128_29	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0176128_31	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0176128_31	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0176128_32	PHROG	phrog_3279	tail fiber protein	tail
UHGV-0176128_32	eggNOG-mapper	935840.JAEQ01000036_gene3232	NA	NA
UHGV-0176128_32	Structural annotation	NF012201	NA	NA
UHGV-0176128_34	Structural annotation	NF040910	NA	NA
UHGV-0176128_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0176128_35	PHROG	phrog_291	endolysin	lysis
UHGV-0176128_35	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0176128_35	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0176128_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176128_35	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176128_35	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0176128_37	PHROG	phrog_15303	NA	unknown function
UHGV-0176128_39	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0176128_40	PHROG	phrog_3754	NA	unknown function
UHGV-0176128_40	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0176128_41	PHROG	phrog_21718	NA	unknown function
UHGV-0176128_41	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176128_42	PHROG	phrog_22984	NA	unknown function