UHGV-0176157

Genome information

Genome length 33,068 bps

CDS count 47

Completeness 80.45% (medium-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176157
vOTU ID	vOTU-022513
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_568904
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.58
Jumbo phage	No

Genome content
Genome length	33,068 bps
GC content	31.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.56%
Average CDS length	655.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176157_1	KOfam	K14059	int; integrase	NA
UHGV-0176157_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0176157_1	UniRef90	UniRef90_A0A1B1LBT0	ICEBs1 integrase Int	NA
UHGV-0176157_1	eggNOG-mapper	1232446.BAIE02000011_gene1633	Site-specific recombinase, phage integrase family	NA
UHGV-0176157_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0176157_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0176157_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176157_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176157_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0176157_2	UniRef90	UniRef90_R5AAT8	Peptidase_M78 domain-containing protein	NA
UHGV-0176157_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0176157_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0176157_3	eggNOG-mapper	1121091.AUMP01000046_gene1814	NA	NA
UHGV-0176157_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0176157_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176157_4	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-0176157_4	eggNOG-mapper	1400520.LFAB_05395	Peptidase S24-like	NA
UHGV-0176157_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176157_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0176157_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0176157_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176157_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176157_5	Structural annotation	PF12844, NF041677, COG1396	NA	NA
UHGV-0176157_10	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0176157_10	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176157_10	UniRef90	UniRef90_R5LPJ0	DnaB_2 domain-containing protein	NA
UHGV-0176157_10	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0176157_10	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0176157_10	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0176157_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176157_10	Structural annotation	TIGR01714	NA	NA
UHGV-0176157_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0176157_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0176157_11	UniRef90	UniRef90_R5LJR5	SF4 helicase domain-containing protein	NA
UHGV-0176157_11	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0176157_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0176157_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0176157_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176157_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0176157_14	PHROG	phrog_322	NA	unknown function
UHGV-0176157_14	UniRef90	UniRef90_UPI000BF964AB	Gp49 family protein	NA
UHGV-0176157_14	eggNOG-mapper	1445809.A0A0A7AR29_9CAUD	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0176157_14	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0176157_14	dbAPIS	APIS043	NA	NA
UHGV-0176157_14	Structural annotation	PF13876	NA	NA
UHGV-0176157_15	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0176157_15	PHROG	phrog_216	integrase	integration and excision
UHGV-0176157_15	UniRef90	UniRef90_R5M261	Tyr recombinase domain-containing protein	NA
UHGV-0176157_15	eggNOG-mapper	1410628.JNKS01000005_gene1245	Phage integrase family	NA
UHGV-0176157_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176157_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176157_15	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0176157_16	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0176157_16	UniRef90	UniRef90_UPI000B58AD6A	sugar-phosphate nucleotidyltransferase	NA
UHGV-0176157_16	eggNOG-mapper	1458856.A0A059T5F9_9CAUD	methyltransferase activity	NA
UHGV-0176157_16	Structural annotation	PF05869, MF_01872, TIGR01712, COG2263	NA	NA
UHGV-0176157_17	Structural annotation	PF17340	NA	NA
UHGV-0176157_24	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0176157_24	PHROG	phrog_200	lipoprotein	other
UHGV-0176157_24	UniRef90	UniRef90_R6BHX9	PHB domain-containing protein	NA
UHGV-0176157_24	eggNOG-mapper	649747.HMPREF0083_03347	HflC protein	NA
UHGV-0176157_24	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0176157_24	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0176157_24	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0176157_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176157_25	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-0176157_25	Structural annotation	PF02996	NA	NA
UHGV-0176157_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176157_26	UniRef90	UniRef90_A0A1C5VGQ3	HNH endonuclease	NA
UHGV-0176157_26	eggNOG-mapper	1219626.HMPREF1639_07400	Endonuclease	NA
UHGV-0176157_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0176157_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0176157_26	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0176157_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0176157_28	UniRef90	UniRef90_UPI0003D5A199	phage terminase small subunit P27 family	NA
UHGV-0176157_28	eggNOG-mapper	1219626.HMPREF1639_07405	phage terminase small subunit	NA
UHGV-0176157_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0176157_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0176157_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0176157_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0176157_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176157_29	UniRef90	UniRef90_A0A1C5VGI7	Phage terminase-like protein, large subunit	NA
UHGV-0176157_29	eggNOG-mapper	1219626.HMPREF1639_07410	Phage terminase-like protein large subunit	NA
UHGV-0176157_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0176157_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0176157_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176157_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0176157_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176157_30	UniRef90	UniRef90_R5XFL4	Phage portal protein HK97 family	NA
UHGV-0176157_30	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0176157_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176157_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0176157_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176157_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0176157_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0176157_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0176157_31	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0176157_31	eggNOG-mapper	536232.CLM_2055	Belongs to the peptidase S14 family	NA
UHGV-0176157_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0176157_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0176157_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0176157_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176157_32	UniRef90	UniRef90_A0A1C6IV65	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0176157_32	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0176157_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176157_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176157_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0176157_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176157_33	UniRef90	UniRef90_UPI000C7E234F	head-tail connector protein	NA
UHGV-0176157_33	eggNOG-mapper	1382315.JPOI01000001_gene279	Phage gp6-like head-tail connector protein	NA
UHGV-0176157_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0176157_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0176157_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0176157_34	PHROG	phrog_25	head closure Hc1	connector
UHGV-0176157_34	UniRef90	UniRef90_A0A2M8TG65	Head-tail adaptor protein	NA
UHGV-0176157_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0176157_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0176157_34	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0176157_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176157_35	UniRef90	UniRef90_UPI00156FE9DA	HK97 gp10 family phage protein	NA
UHGV-0176157_35	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0176157_35	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0176157_36	Structural annotation	PF06141	NA	NA
UHGV-0176157_37	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0176157_37	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-0176157_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0176157_38	PHROG	phrog_29863	NA	unknown function
UHGV-0176157_38	eggNOG-mapper	755731.Clo1100_0553	NA	NA
UHGV-0176157_39	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0176157_39	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0176157_39	UniRef90	UniRef90_A0A415G8B3	PhageMin_Tail domain-containing protein	NA
UHGV-0176157_39	eggNOG-mapper	658655.HMPREF0988_00531	Phage-related minor tail protein	NA
UHGV-0176157_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0176157_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0176157_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0176157_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176157_40	UniRef90	UniRef90_A0A6N3CFG4	Phage tail protein	NA
UHGV-0176157_40	eggNOG-mapper	1235800.C819_02224	NA	NA
UHGV-0176157_40	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0176157_41	PHROG	phrog_3558	tail protein	tail
UHGV-0176157_41	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0176157_41	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0176157_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176157_41	COG	COG4926	Phage-related protein	NA
UHGV-0176157_41	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0176157_42	PHROG	phrog_372	tail protein	tail
UHGV-0176157_42	UniRef90	UniRef90_UPI000B8B5168	NA	NA
UHGV-0176157_42	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0176157_42	Pfam	PF05895	NA	DUF859
UHGV-0176157_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0176157_42	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0176157_43	eggNOG-mapper	1399942.U3PDS7_9CAUD	NA	NA
UHGV-0176157_43	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0176157_44	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0176157_44	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0176157_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0176157_46	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0176157_46	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0176157_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen