UHGV-0176174

Genome information

Genome length 42,403 bps

CDS count 80

Completeness 99.03% (high-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176174
vOTU ID	vOTU-070543
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581091
BioSample	SAMN09781788
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.46
Jumbo phage	No

Genome content
Genome length	42,403 bps
GC content	51.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	93.30%
Average CDS length	501.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176174_1	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0176174_1	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0176174_3	PHROG	phrog_19111	NA	unknown function
UHGV-0176174_3	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0176174_3	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0176174_5	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0176174_6	Structural annotation	PF09826, MF_03001, TIGR04528, COG2706	NA	NA
UHGV-0176174_7	PHROG	phrog_18725	NA	unknown function
UHGV-0176174_7	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0176174_8	PHROG	phrog_13879	NA	unknown function
UHGV-0176174_8	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0176174_8	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0176174_9	PHROG	phrog_1194	NA	unknown function
UHGV-0176174_9	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0176174_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0176174_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176174_10	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0176174_10	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0176174_10	COG	COG1511	NA	NA
UHGV-0176174_10	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0176174_11	PHROG	phrog_706	NA	unknown function
UHGV-0176174_11	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0176174_11	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0176174_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176174_11	Structural annotation	PF06854	NA	NA
UHGV-0176174_12	PHROG	phrog_11299	NA	unknown function
UHGV-0176174_12	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0176174_12	Structural annotation	PF10666	NA	NA
UHGV-0176174_13	PHROG	phrog_3099	NA	unknown function
UHGV-0176174_13	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0176174_13	Structural annotation	TIGR02126	NA	NA
UHGV-0176174_14	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0176174_14	Structural annotation	PF12691	NA	NA
UHGV-0176174_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176174_15	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0176174_15	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0176174_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176174_15	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0176174_16	PHROG	phrog_3366	NA	unknown function
UHGV-0176174_16	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0176174_16	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0176174_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176174_17	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0176174_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0176174_18	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0176174_18	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0176174_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0176174_18	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0176174_19	PHROG	phrog_909	major head protein	head and packaging
UHGV-0176174_19	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0176174_19	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0176174_19	Structural annotation	PF02924	NA	NA
UHGV-0176174_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176174_20	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0176174_20	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0176174_20	Structural annotation	PF06810	NA	NA
UHGV-0176174_23	PHROG	phrog_29211	NA	unknown function
UHGV-0176174_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176174_25	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0176174_25	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0176174_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176174_25	COG	COG2369	NA	NA
UHGV-0176174_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176174_26	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0176174_26	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0176174_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176174_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176174_27	PHROG	phrog_10250	NA	unknown function
UHGV-0176174_27	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-0176174_27	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0176174_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176174_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176174_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176174_27	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176174_28	UniRef90	UniRef90_U2R3C0	Nascent polypeptide-associated complex domain protein	NA
UHGV-0176174_28	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0176174_28	Structural annotation	PF13542	NA	NA
UHGV-0176174_29	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0176174_29	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0176174_29	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0176174_29	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0176174_29	Pfam	PF00692	dUTPase	dUTPase
UHGV-0176174_29	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0176174_29	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0176174_29	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0176174_30	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0176174_30	UniRef90	UniRef90_A0A2U1BC09	NA	NA
UHGV-0176174_30	eggNOG-mapper	1366055.S5MLS6_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0176174_30	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0176174_30	Structural annotation	PF18909	NA	NA
UHGV-0176174_31	PHROG	phrog_24386	NA	unknown function
UHGV-0176174_31	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0176174_31	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0176174_32	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0176174_33	eggNOG-mapper	1121101.HMPREF1532_02588	NA	NA
UHGV-0176174_34	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176174_34	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0176174_34	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0176174_35	UniRef90	UniRef90_A0A1C6DFA0	FAD-dependent thymidylate synthase	NA
UHGV-0176174_35	eggNOG-mapper	397290.C810_01371	NA	NA
UHGV-0176174_35	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0176174_35	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0176174_40	PHROG	phrog_22543	NA	unknown function
UHGV-0176174_40	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-0176174_41	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0176174_41	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-0176174_41	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0176174_41	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0176174_41	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0176174_41	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0176174_47	Pfam	PF04448	NA	DUF551
UHGV-0176174_47	Structural annotation	NF041588	NA	NA
UHGV-0176174_48	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0176174_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0176174_48	UniRef90	UniRef90_A0A098AU96	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	NA
UHGV-0176174_48	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0176174_48	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0176174_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0176174_48	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0176174_51	PHROG	phrog_15768	NA	unknown function
UHGV-0176174_51	UniRef90	UniRef90_A0A4R1QQE6	NA	NA
UHGV-0176174_51	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0176174_51	AcrCatalog	cluster_38323	NA	NA
UHGV-0176174_51	Pfam	PF19808	NA	DUF6291
UHGV-0176174_51	Structural annotation	PF19808	NA	NA
UHGV-0176174_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176174_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176174_53	UniRef90	UniRef90_A0A357B3Z3	Single-stranded DNA-binding protein	NA
UHGV-0176174_53	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0176174_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176174_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176174_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176174_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176174_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0176174_54	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176174_54	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0176174_54	eggNOG-mapper	1048339.KB913029_gene4935	PFAM HNH endonuclease	NA
UHGV-0176174_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0176174_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0176174_55	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0176174_55	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0176174_55	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0176174_55	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0176174_56	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176174_56	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0176174_56	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0176174_56	Pfam	PF04404	ERF superfamily	ERF
UHGV-0176174_56	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0176174_59	PHROG	phrog_4973	NA	unknown function
UHGV-0176174_59	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0176174_59	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0176174_59	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0176174_59	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0176174_62	PHROG	phrog_4433	NA	unknown function
UHGV-0176174_62	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0176174_62	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0176174_62	Structural annotation	NF007410	NA	NA
UHGV-0176174_63	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0176174_63	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0176174_65	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0176174_65	UniRef90	UniRef90_A0A371AUE2	XRE family transcriptional regulator	NA
UHGV-0176174_65	eggNOG-mapper	1449336.JQLO01000001_gene2237	Transcriptional regulator, Cro CI family	NA
UHGV-0176174_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176174_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176174_65	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0176174_66	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0176174_66	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0176174_66	UniRef90	UniRef90_A0A1G7UMC4	HTH cro/C1-type domain-containing protein	NA
UHGV-0176174_66	eggNOG-mapper	1589749.A0A0B5A036_9CAUD	sequence-specific DNA binding	NA
UHGV-0176174_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176174_66	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-0176174_70	PHROG	phrog_26308	NA	unknown function
UHGV-0176174_70	UniRef90	UniRef90_A0A3S1E765	Zinc ribbon domain-containing protein	NA
UHGV-0176174_70	eggNOG-mapper	1345695.CLSA_c29670	NA	NA
UHGV-0176174_70	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0176174_70	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0176174_70	Structural annotation	PF03843, MF_01959, TIGR00752, NF041910, COG3390	NA	NA
UHGV-0176174_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176174_72	Structural annotation	PF12844	NA	NA
UHGV-0176174_73	KOfam	K14059	int; integrase	NA
UHGV-0176174_73	PHROG	phrog_1	integrase	integration and excision
UHGV-0176174_73	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0176174_73	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0176174_73	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176174_73	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176174_73	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0176174_74	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0176174_75	Structural annotation	PF12510	NA	NA
UHGV-0176174_76	PHROG	phrog_20016	NA	unknown function
UHGV-0176174_76	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0176174_76	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0176174_76	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176174_77	PHROG	phrog_16490	NA	unknown function
UHGV-0176174_77	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0176174_78	PHROG	phrog_22984	NA	unknown function
UHGV-0176174_79	PHROG	phrog_21718	NA	unknown function
UHGV-0176174_79	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176174_80	PHROG	phrog_3754	NA	unknown function
UHGV-0176174_80	eggNOG-mapper	476272.RUMHYD_01764	NA	NA