UHGV-0176183

Genome information

Genome length 31,791 bps

CDS count 55

Completeness 89.83% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176183
vOTU ID	vOTU-028882
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588248
BioSample	SAMN09781730
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.98
Jumbo phage	No

Genome content
Genome length	31,791 bps
GC content	57.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.66%
Average CDS length	545.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176183_1	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0176183_1	UniRef90	UniRef90_UPI000C082058	DNA cytosine methyltransferase	NA
UHGV-0176183_1	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0176183_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176183_3	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0176183_3	PHROG	phrog_27290	NA	unknown function
UHGV-0176183_3	UniRef90	UniRef90_UPI001BB4839F	ParB N-terminal domain-containing protein	NA
UHGV-0176183_3	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0176183_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176183_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176183_3	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0176183_4	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0176183_4	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0176183_4	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0176183_4	eggNOG-mapper	1007096.BAGW01000011_gene2363	Anion-transporting ATPase	NA
UHGV-0176183_4	Pfam	PF13614	AAA domain	AAA_31
UHGV-0176183_4	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0176183_4	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0176183_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0176183_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0176183_7	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0176183_7	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0176183_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0176183_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0176183_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176183_7	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0176183_8	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176183_8	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0176183_8	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0176183_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0176183_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176183_8	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0176183_10	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0176183_10	UniRef90	UniRef90_U2QJH6	DNA-binding helix-turn-helix protein	NA
UHGV-0176183_10	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176183_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0176183_10	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0176183_10	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0176183_11	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0176183_12	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0176183_12	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0176183_12	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0176183_12	eggNOG-mapper	658088.HMPREF0987_00908	Helix-turn-helix domain	NA
UHGV-0176183_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176183_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176183_12	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0176183_13	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0176183_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176183_13	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0176183_14	PHROG	phrog_17982	NA	unknown function
UHGV-0176183_14	eggNOG-mapper	1284686.HMPREF1630_01985	NA	NA
UHGV-0176183_14	Pfam	PF14020	NA	DUF4236
UHGV-0176183_14	Structural annotation	PF14020	NA	NA
UHGV-0176183_15	KOfam	K14059	int; integrase	NA
UHGV-0176183_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0176183_15	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0176183_15	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0176183_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0176183_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176183_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176183_15	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4973	NA	NA
UHGV-0176183_16	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0176183_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176183_19	PHROG	phrog_16490	NA	unknown function
UHGV-0176183_19	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0176183_20	PHROG	phrog_22984	NA	unknown function
UHGV-0176183_23	UniRef90	UniRef90_A0A096AZ46	HTH cro/C1-type domain-containing protein	NA
UHGV-0176183_23	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176183_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176183_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176183_23	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0176183_24	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176183_24	UniRef90	UniRef90_A0A351TR50	Transcriptional regulator	NA
UHGV-0176183_24	eggNOG-mapper	478749.BRYFOR_06178	AP2 domain protein	NA
UHGV-0176183_24	Structural annotation	PF17375	NA	NA
UHGV-0176183_26	PHROG	phrog_21357	endolysin	lysis
UHGV-0176183_26	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0176183_26	eggNOG-mapper	693746.OBV_18290	CHAP domain	NA
UHGV-0176183_26	Pfam	PF05257	CHAP domain	CHAP
UHGV-0176183_26	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0176183_26	Structural annotation	TIGR02594	NA	NA
UHGV-0176183_27	PHROG	phrog_13256	NA	unknown function
UHGV-0176183_27	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0176183_29	PHROG	phrog_937	hemolysin	other
UHGV-0176183_29	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0176183_34	Pfam	PF18902	NA	DUF5658
UHGV-0176183_34	Structural annotation	PF18902	NA	NA
UHGV-0176183_37	UniRef90	UniRef90_A0A810QCC8	Peptidase S74 domain-containing protein	NA
UHGV-0176183_37	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0176183_37	Structural annotation	TIGR01643	NA	NA
UHGV-0176183_38	PHROG	phrog_6616	tail protein	tail
UHGV-0176183_38	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0176183_38	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0176183_38	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0176183_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0176183_40	PHROG	phrog_23464	NA	unknown function
UHGV-0176183_40	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0176183_40	COG	COG5412	Phage-related protein	NA
UHGV-0176183_40	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0176183_42	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0176183_43	PHROG	phrog_88	major tail protein	tail
UHGV-0176183_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0176183_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0176183_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176183_44	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0176183_44	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0176183_44	Structural annotation	TIGR01725	NA	NA
UHGV-0176183_45	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0176183_45	Structural annotation	PF05657	NA	NA
UHGV-0176183_46	PHROG	phrog_25	head closure Hc1	connector
UHGV-0176183_46	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0176183_46	eggNOG-mapper	545697.HMPREF0216_00920	head-tail adaptor	NA
UHGV-0176183_46	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0176183_46	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0176183_46	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0176183_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176183_47	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-0176183_47	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-0176183_47	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0176183_47	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0176183_48	eggNOG-mapper	693746.OBV_20050	NA	NA
UHGV-0176183_48	Structural annotation	PF03898, NF033675	NA	NA
UHGV-0176183_49	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176183_49	UniRef90	UniRef90_A0A8J6MG28	Phage major capsid protein	NA
UHGV-0176183_49	eggNOG-mapper	742738.HMPREF9460_00876	Phage capsid family	NA
UHGV-0176183_49	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176183_49	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176183_49	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0176183_49	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176183_50	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0176183_50	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0176183_50	UniRef90	UniRef90_UPI00195CEB37	Clp protease ClpP	NA
UHGV-0176183_50	eggNOG-mapper	742738.HMPREF9460_00875	Clp protease	NA
UHGV-0176183_50	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0176183_50	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0176183_50	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0176183_51	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176183_51	UniRef90	UniRef90_A0A7X3AS02	Phage portal protein	NA
UHGV-0176183_51	eggNOG-mapper	1007096.BAGW01000012_gene2376	Phage portal protein	NA
UHGV-0176183_51	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176183_51	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0176183_51	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176183_51	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0176183_53	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176183_53	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0176183_53	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0176183_53	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0176183_53	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0176183_53	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176183_53	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0176183_54	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0176183_54	UniRef90	UniRef90_G9YLN7	Phage terminase, small subunit, P27 family	NA
UHGV-0176183_54	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0176183_54	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0176183_54	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0176183_54	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0176183_54	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0176183_55	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0176183_55	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0176183_55	UniRef90	UniRef90_A0A1V5IAX9	Methyltransferase	NA
UHGV-0176183_55	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0176183_55	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0176183_55	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0176183_55	COG	COG0863	DNA modification methylase	NA
UHGV-0176183_55	Structural annotation	PF01555, MF_00786, NF010253, COG0863	NA	NA