UHGV-0176304

Genome information

Genome length 31,914 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176304
vOTU ID	vOTU-046578
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592456
BioSample	SAMN09781743
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.4
Jumbo phage	No

Genome content
Genome length	31,914 bps
GC content	58.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.50%
Average CDS length	562.70 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176304_1	KOfam	K14059	int; integrase	NA
UHGV-0176304_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0176304_1	UniRef90	UniRef90_A0A316RZQ6	Tyr recombinase domain-containing protein	NA
UHGV-0176304_1	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0176304_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176304_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176304_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0176304_3	PHROG	phrog_13712	holin	lysis
UHGV-0176304_3	eggNOG-mapper	397291.C804_01108	NA	NA
UHGV-0176304_3	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0176304_4	PHROG	phrog_199	holin	lysis
UHGV-0176304_4	UniRef90	UniRef90_A0A2A6Z8T2	Holin	NA
UHGV-0176304_4	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0176304_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0176304_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0176304_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0176304_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0176304_5	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0176304_5	PHROG	phrog_894	endolysin	lysis
UHGV-0176304_5	UniRef90	UniRef90_A0A3C0D0L9	Peptidase M15	NA
UHGV-0176304_5	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0176304_5	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0176304_5	COG	COG3108	NA	NA
UHGV-0176304_5	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0176304_6	PHROG	phrog_9534	head protein	head and packaging
UHGV-0176304_6	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0176304_6	Structural annotation	PF21567	NA	NA
UHGV-0176304_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0176304_7	UniRef90	UniRef90_UPI001C0C4E4F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0176304_7	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0176304_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0176304_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0176304_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176304_8	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0176304_8	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0176304_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0176304_9	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0176304_9	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0176304_9	COG	COG1511	NA	NA
UHGV-0176304_10	PHROG	phrog_1633	NA	unknown function
UHGV-0176304_10	eggNOG-mapper	936375.HMPREF1152_0687	NA	NA
UHGV-0176304_11	PHROG	phrog_1526	NA	unknown function
UHGV-0176304_11	UniRef90	UniRef90_A0A123T5V6	NA	NA
UHGV-0176304_11	eggNOG-mapper	1214184.ALKY01000039_gene911	NA	NA
UHGV-0176304_12	PHROG	phrog_117	major tail protein	tail
UHGV-0176304_12	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0176304_12	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0176304_12	COG	COG5492	NA	NA
UHGV-0176304_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0176304_13	PHROG	phrog_123	tail terminator	connector
UHGV-0176304_13	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0176304_13	Structural annotation	PF06141	NA	NA
UHGV-0176304_14	PHROG	phrog_387	neck protein	connector
UHGV-0176304_14	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0176304_14	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0176304_15	PHROG	phrog_501	head closure Hc1	connector
UHGV-0176304_15	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-0176304_15	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0176304_15	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0176304_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0176304_16	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0176304_16	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0176304_16	Structural annotation	PF09355	NA	NA
UHGV-0176304_17	PHROG	phrog_267	major head protein	head and packaging
UHGV-0176304_17	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0176304_17	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0176304_17	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176304_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176304_18	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0176304_18	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0176304_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176304_18	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0176304_19	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0176304_19	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0176304_19	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0176304_21	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0176304_21	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0176304_21	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0176304_21	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0176304_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0176304_22	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0176304_22	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176304_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176304_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176304_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176304_23	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0176304_23	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0176304_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176304_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176304_23	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0176304_24	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0176304_24	Structural annotation	PF19962	NA	NA
UHGV-0176304_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176304_25	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0176304_25	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0176304_25	Structural annotation	PF01844	NA	NA
UHGV-0176304_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176304_26	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0176304_26	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0176304_26	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0176304_26	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0176304_27	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0176304_27	UniRef90	UniRef90_A0A6L5TFB3	Radical SAM protein	NA
UHGV-0176304_27	eggNOG-mapper	1235798.C817_05514	NA	NA
UHGV-0176304_27	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0176304_27	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0176304_28	UniRef90	UniRef90_UPI000CF85C21	NA	NA
UHGV-0176304_30	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0176304_30	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0176304_30	UniRef90	UniRef90_A0A843RR39	Helix-turn-helix domain-containing protein	NA
UHGV-0176304_30	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176304_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0176304_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176304_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176304_30	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0176304_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0176304_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0176304_31	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0176304_31	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0176304_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0176304_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176304_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0176304_32	PHROG	phrog_15768	NA	unknown function
UHGV-0176304_32	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0176304_32	eggNOG-mapper	929704.Myrod_0677	NA	NA
UHGV-0176304_32	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0176304_32	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0176304_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176304_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176304_33	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0176304_33	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0176304_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176304_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176304_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176304_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176304_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0176304_34	PHROG	phrog_7566	NA	unknown function
UHGV-0176304_34	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0176304_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0176304_36	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0176304_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0176304_37	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0176304_38	Structural annotation	NF033787	NA	NA
UHGV-0176304_45	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0176304_47	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0176304_47	Pfam	PF05339	NA	DUF739
UHGV-0176304_47	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0176304_47	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0176304_49	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0176304_51	UniRef90	UniRef90_A0A2J4JRR6	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0176304_51	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0176304_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0176304_51	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0176304_52	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0176304_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0176304_52	UniRef90	UniRef90_A0A2J4JRR4	Helix-turn-helix domain-containing protein	NA
UHGV-0176304_52	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0176304_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176304_52	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0176304_52	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0176304_52	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0176304_53	UniRef90	UniRef90_A0A1W2B3I7	Ig-like domain (Group 2)	NA
UHGV-0176304_53	eggNOG-mapper	649831.L083_0393	NA	NA
UHGV-0176304_53	Structural annotation	PF16900, NF040991	NA	NA