UHGV-0176351

Genome information

Genome length 32,013 bps

CDS count 56

Completeness 76.86% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176351
vOTU ID	vOTU-022518
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590718
BioSample	SAMN09781782
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30
Jumbo phage	No

Genome content
Genome length	32,013 bps
GC content	54.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.92%
Average CDS length	528.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176351_1	PHROG	phrog_27197	NA	unknown function
UHGV-0176351_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0176351_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0176351_2	Structural annotation	PF21715, MF_01804, TIGR00281, COG1386	NA	NA
UHGV-0176351_4	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176351_4	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0176351_4	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0176351_4	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0176351_4	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0176351_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0176351_4	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0176351_5	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0176351_5	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176351_5	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0176351_5	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0176351_5	Pfam	PF03837	RecT family	RecT
UHGV-0176351_5	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0176351_5	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0176351_5	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0176351_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176351_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176351_6	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0176351_6	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0176351_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176351_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176351_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176351_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176351_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0176351_8	PHROG	phrog_15768	NA	unknown function
UHGV-0176351_8	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-0176351_8	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0176351_8	AcrCatalog	cluster_38323	NA	NA
UHGV-0176351_8	Pfam	PF19808	NA	DUF6291
UHGV-0176351_8	Structural annotation	PF19808	NA	NA
UHGV-0176351_9	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0176351_9	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0176351_9	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0176351_9	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0176351_9	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0176351_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176351_9	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0176351_12	PHROG	phrog_38832	NA	unknown function
UHGV-0176351_13	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0176351_13	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0176351_13	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0176351_13	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0176351_17	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176351_17	UniRef90	UniRef90_UPI0005288167	NA	NA
UHGV-0176351_17	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0176351_17	Pfam	PF06356	NA	DUF1064
UHGV-0176351_17	Structural annotation	PF06356	NA	NA
UHGV-0176351_20	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0176351_21	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0176351_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176351_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176351_22	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0176351_22	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0176351_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176351_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176351_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176351_23	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0176351_23	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0176351_23	Structural annotation	PF13542	NA	NA
UHGV-0176351_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176351_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0176351_24	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0176351_24	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0176351_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176351_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176351_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176351_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176351_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176351_25	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0176351_25	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0176351_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176351_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176351_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176351_26	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0176351_26	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0176351_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176351_26	COG	COG2369	NA	NA
UHGV-0176351_26	Structural annotation	PF06152	NA	NA
UHGV-0176351_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176351_27	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0176351_27	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0176351_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176351_27	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0176351_28	PHROG	phrog_212	major head protein	head and packaging
UHGV-0176351_28	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0176351_28	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0176351_28	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0176351_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176351_29	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0176351_30	PHROG	phrog_3366	NA	unknown function
UHGV-0176351_30	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0176351_30	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0176351_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176351_31	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0176351_31	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0176351_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176351_31	Structural annotation	PF11114	NA	NA
UHGV-0176351_32	PHROG	phrog_3266	tail completion	connector
UHGV-0176351_32	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0176351_32	Structural annotation	PF12691	NA	NA
UHGV-0176351_33	PHROG	phrog_3099	NA	unknown function
UHGV-0176351_33	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0176351_33	Structural annotation	TIGR02126	NA	NA
UHGV-0176351_34	PHROG	phrog_11299	NA	unknown function
UHGV-0176351_34	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0176351_34	Structural annotation	PF10666	NA	NA
UHGV-0176351_35	PHROG	phrog_706	NA	unknown function
UHGV-0176351_35	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0176351_35	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0176351_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176351_35	Structural annotation	PF06854	NA	NA
UHGV-0176351_36	Structural annotation	PF02883, MF_00791, TIGR04209, COG2967	NA	NA
UHGV-0176351_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176351_37	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0176351_37	COG	COG1511	NA	NA
UHGV-0176351_37	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0176351_38	PHROG	phrog_1194	NA	unknown function
UHGV-0176351_38	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0176351_38	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0176351_39	PHROG	phrog_32744	NA	unknown function
UHGV-0176351_39	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0176351_39	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0176351_41	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0176351_42	PHROG	phrog_31538	NA	unknown function
UHGV-0176351_43	PHROG	phrog_13589	NA	unknown function
UHGV-0176351_43	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0176351_44	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-0176351_48	PHROG	phrog_4105	NA	unknown function
UHGV-0176351_49	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0176351_49	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0176351_50	PHROG	phrog_13256	NA	unknown function
UHGV-0176351_50	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0176351_51	PHROG	phrog_21357	endolysin	lysis
UHGV-0176351_51	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0176351_51	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0176351_51	Pfam	PF05257	CHAP domain	CHAP
UHGV-0176351_51	COG	COG1388	LysM repeat	NA
UHGV-0176351_51	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0176351_53	PHROG	phrog_3754	NA	unknown function
UHGV-0176351_53	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0176351_54	PHROG	phrog_21718	NA	unknown function
UHGV-0176351_54	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176351_55	PHROG	phrog_22984	NA	unknown function
UHGV-0176351_56	PHROG	phrog_16490	NA	unknown function
UHGV-0176351_56	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA