UHGV-0176374

Genome information

Genome length 33,186 bps

CDS count 54

Completeness 78.48% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176374
vOTU ID	vOTU-028891
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580925
BioSample	SAMN09781765
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.56
Jumbo phage	No

Genome content
Genome length	33,186 bps
GC content	55.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.77%
Average CDS length	573.94 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176374_3	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0176374_3	Structural annotation	PF10651	NA	NA
UHGV-0176374_4	PHROG	phrog_15303	NA	unknown function
UHGV-0176374_4	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0176374_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0176374_6	PHROG	phrog_291	endolysin	lysis
UHGV-0176374_6	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0176374_6	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0176374_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176374_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176374_6	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0176374_7	PHROG	phrog_1382	NA	unknown function
UHGV-0176374_7	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0176374_9	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0176374_10	PHROG	phrog_3558	tail protein	tail
UHGV-0176374_10	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0176374_10	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0176374_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176374_10	COG	COG4926	Phage-related protein	NA
UHGV-0176374_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0176374_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176374_11	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0176374_11	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0176374_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176374_11	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0176374_12	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0176374_12	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0176374_12	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0176374_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176374_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176374_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176374_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176374_15	PHROG	phrog_885	major tail protein	tail
UHGV-0176374_15	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0176374_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176374_16	Structural annotation	PF13554	NA	NA
UHGV-0176374_17	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0176374_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176374_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176374_19	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0176374_19	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0176374_19	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0176374_20	Structural annotation	PF06810	NA	NA
UHGV-0176374_21	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0176374_21	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0176374_21	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0176374_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176374_22	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0176374_22	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0176374_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176374_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0176374_24	PHROG	phrog_8680	NA	unknown function
UHGV-0176374_24	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0176374_24	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0176374_24	Pfam	PF14386	NA	DUF4417
UHGV-0176374_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176374_24	Structural annotation	PF14386	NA	NA
UHGV-0176374_26	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0176374_26	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0176374_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176374_26	COG	COG2369	NA	NA
UHGV-0176374_26	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176374_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176374_28	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0176374_28	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0176374_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176374_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0176374_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176374_29	PHROG	phrog_10250	NA	unknown function
UHGV-0176374_29	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0176374_29	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0176374_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176374_29	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0176374_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176374_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176374_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176374_30	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0176374_30	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0176374_30	Structural annotation	PF04218	NA	NA
UHGV-0176374_32	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0176374_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0176374_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176374_34	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176374_34	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0176374_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0176374_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176374_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0176374_37	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0176374_38	Structural annotation	PF11417	NA	NA
UHGV-0176374_39	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0176374_39	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176374_39	UniRef90	UniRef90_A0A844D5V0	DnaD domain protein	NA
UHGV-0176374_39	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0176374_39	Pfam	PF19808	NA	DUF6291
UHGV-0176374_39	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0176374_39	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0176374_39	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0176374_40	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0176374_40	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0176374_41	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176374_41	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-0176374_41	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0176374_41	Pfam	PF03837	RecT family	RecT
UHGV-0176374_41	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0176374_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0176374_41	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0176374_42	PHROG	phrog_674	NA	unknown function
UHGV-0176374_42	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0176374_42	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-0176374_42	Pfam	PF07083	NA	DUF1351
UHGV-0176374_42	Structural annotation	PF07083	NA	NA
UHGV-0176374_43	Structural annotation	PF14120	NA	NA
UHGV-0176374_46	Structural annotation	PF09537	NA	NA
UHGV-0176374_47	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0176374_48	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0176374_50	PHROG	phrog_4433	NA	unknown function
UHGV-0176374_50	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0176374_50	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0176374_50	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0176374_52	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0176374_52	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0176374_53	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0176374_53	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0176374_54	PHROG	phrog_15968	anti-repressor	transcription regulation
UHGV-0176374_54	UniRef90	UniRef90_UPI00126F6F93	phage antirepressor KilAC domain-containing protein	NA
UHGV-0176374_54	eggNOG-mapper	1589751.A0A0C5AEJ9_9CAUD	DNA binding	NA
UHGV-0176374_54	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT