UHGV-0176393

Genome information

Genome length 43,500 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176393
vOTU ID	vOTU-003892
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585519
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.2
Jumbo phage	No

Genome content
Genome length	43,500 bps
GC content	55.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	95.42%
Average CDS length	818.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176393_1	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0176393_1	PHROG	phrog_7713	NA	unknown function
UHGV-0176393_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0176393_1	COG	COG1357	NA	NA
UHGV-0176393_1	Structural annotation	PF13599, NF000139	NA	NA
UHGV-0176393_4	PHROG	phrog_824	NA	unknown function
UHGV-0176393_4	UniRef90	UniRef90_UPI00189BCDD7	VRR-NUC domain-containing protein	NA
UHGV-0176393_4	eggNOG-mapper	1408428.JNJP01000030_gene973	VRR_NUC	NA
UHGV-0176393_6	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176393_6	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0176393_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176393_7	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0176393_7	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176393_7	UniRef90	UniRef90_UPI000F05C9E1	recombinase RecT	NA
UHGV-0176393_7	eggNOG-mapper	1243664.CAVL020000020_gene3198	RecT family	NA
UHGV-0176393_7	Pfam	PF03837	RecT family	RecT
UHGV-0176393_7	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0176393_7	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0176393_7	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0176393_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176393_8	UniRef90	UniRef90_A0A3D3XZF3	YqaJ domain-containing protein	NA
UHGV-0176393_8	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0176393_8	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0176393_8	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0176393_8	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0176393_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0176393_12	PHROG	phrog_2113	NA	unknown function
UHGV-0176393_13	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0176393_13	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0176393_14	UniRef90	UniRef90_UPI001B1B66C7	helix-turn-helix transcriptional regulator	NA
UHGV-0176393_14	eggNOG-mapper	1111454.HMPREF1250_1029	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176393_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176393_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0176393_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176393_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176393_15	UniRef90	UniRef90_A0A8B2X256	XRE family transcriptional regulator	NA
UHGV-0176393_15	eggNOG-mapper	1462526.BN990_03843	Helix-turn-helix domain	NA
UHGV-0176393_15	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0176393_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176393_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176393_15	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176393_18	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0176393_19	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0176393_19	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0176393_20	KOfam	K14059	int; integrase	NA
UHGV-0176393_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0176393_20	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0176393_20	eggNOG-mapper	411471.SUBVAR_05816	Belongs to the 'phage' integrase family	NA
UHGV-0176393_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176393_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176393_20	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0176393_21	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0176393_21	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0176393_21	Structural annotation	PF02255, NF007156, COG1447	NA	NA
UHGV-0176393_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176393_24	PHROG	phrog_22984	NA	unknown function
UHGV-0176393_25	Structural annotation	PF20477, NF033819	NA	NA
UHGV-0176393_26	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0176393_27	PHROG	phrog_1129	holin	lysis
UHGV-0176393_27	UniRef90	UniRef90_A0A2V2CUX8	Enolase	NA
UHGV-0176393_27	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0176393_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0176393_27	Structural annotation	PF06946	NA	NA
UHGV-0176393_28	PHROG	phrog_937	hemolysin	other
UHGV-0176393_28	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0176393_29	PHROG	phrog_1493	endolysin	lysis
UHGV-0176393_29	UniRef90	UniRef90_A0A1C6GMR6	NlpC/P60 family	NA
UHGV-0176393_29	eggNOG-mapper	394503.Ccel_3272	NLP P60 protein	NA
UHGV-0176393_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0176393_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0176393_29	Structural annotation	PF01471, PF00877, NF033742, NF038080, COG0791	NA	NA
UHGV-0176393_30	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0176393_30	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0176393_30	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0176393_30	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0176393_30	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0176393_30	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-0176393_32	PHROG	phrog_22978	NA	unknown function
UHGV-0176393_32	eggNOG-mapper	1123288.SOV_4c02780	protein secretion by the type IV secretion system	NA
UHGV-0176393_32	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0176393_32	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0176393_32	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0176393_33	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0176393_34	PHROG	phrog_372	tail protein	tail
UHGV-0176393_34	UniRef90	UniRef90_UPI001EDDCD01	NA	NA
UHGV-0176393_34	eggNOG-mapper	553973.CLOHYLEM_06931	tail collar domain protein	NA
UHGV-0176393_34	Pfam	PF05895	NA	DUF859
UHGV-0176393_34	COG	COG4675	Phage tail collar domain	NA
UHGV-0176393_34	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0176393_36	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0176393_36	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0176393_36	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0176393_37	PHROG	phrog_12105	NA	unknown function
UHGV-0176393_37	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0176393_38	PHROG	phrog_15239	NA	unknown function
UHGV-0176393_39	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0176393_39	UniRef90	UniRef90_A0A2V2GQW4	N4-gp56 family major capsid protein	NA
UHGV-0176393_39	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0176393_39	Pfam	PF13252	NA	DUF4043
UHGV-0176393_39	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0176393_39	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176393_40	PHROG	phrog_13908	NA	unknown function
UHGV-0176393_40	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0176393_41	KOfam	K07584	NA	NA
UHGV-0176393_41	PHROG	phrog_4478	peptidase	other
UHGV-0176393_41	eggNOG-mapper	1009370.ALO_08023	Cysteine protease Prp	NA
UHGV-0176393_41	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0176393_41	COG	COG2868	NA	NA
UHGV-0176393_41	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0176393_42	PHROG	phrog_156	portal protein	head and packaging
UHGV-0176393_42	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0176393_42	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0176393_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176393_43	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0176393_43	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-0176393_43	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0176393_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176393_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176393_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176393_49	PHROG	phrog_22740	NA	unknown function
UHGV-0176393_49	UniRef90	UniRef90_UPI001E288665	phage N-6-adenine-methyltransferase	NA
UHGV-0176393_49	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0176393_49	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0176393_49	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0176393_50	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0176393_50	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0176393_50	UniRef90	UniRef90_UPI00164AFBC1	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0176393_50	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0176393_50	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0176393_50	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0176393_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0176393_50	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0176393_51	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0176393_51	PHROG	phrog_923	NA	unknown function
UHGV-0176393_51	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0176393_51	Structural annotation	PF13599, NF000421, COG1357	NA	NA