UHGV-0176419

Genome information

Genome length 42,285 bps

CDS count 73

Completeness 100.00% (complete)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176419
vOTU ID	vOTU-046580
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_575690
BioSample	SAMN07448978
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.4
Jumbo phage	No

Genome content
Genome length	42,285 bps
GC content	53.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	88.40%
Average CDS length	514.85 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176419_2	Structural annotation	PF12510	NA	NA
UHGV-0176419_3	PHROG	phrog_20016	NA	unknown function
UHGV-0176419_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0176419_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0176419_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176419_5	PHROG	phrog_16490	NA	unknown function
UHGV-0176419_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0176419_6	PHROG	phrog_22984	NA	unknown function
UHGV-0176419_7	PHROG	phrog_21718	NA	unknown function
UHGV-0176419_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176419_8	PHROG	phrog_3754	NA	unknown function
UHGV-0176419_8	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0176419_9	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-0176419_9	Structural annotation	PF11039, MF_02210, NF000360, COG3981	NA	NA
UHGV-0176419_12	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-0176419_13	PHROG	phrog_15303	NA	unknown function
UHGV-0176419_13	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0176419_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0176419_15	PHROG	phrog_291	endolysin	lysis
UHGV-0176419_15	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0176419_15	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0176419_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176419_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176419_15	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0176419_16	PHROG	phrog_1382	NA	unknown function
UHGV-0176419_16	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0176419_18	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0176419_19	PHROG	phrog_3558	tail protein	tail
UHGV-0176419_19	UniRef90	UniRef90_UPI0013DF37AE	phage tail protein	NA
UHGV-0176419_19	eggNOG-mapper	1035184.HMPREF1042_1326	Prophage endopeptidase tail	NA
UHGV-0176419_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176419_19	COG	COG4926	Phage-related protein	NA
UHGV-0176419_19	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0176419_20	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0176419_20	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0176419_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176419_20	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0176419_21	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0176419_21	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0176419_21	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0176419_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176419_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176419_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176419_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176419_24	PHROG	phrog_885	major tail protein	tail
UHGV-0176419_24	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0176419_24	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176419_25	Structural annotation	PF13554	NA	NA
UHGV-0176419_26	PHROG	phrog_17977	NA	unknown function
UHGV-0176419_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176419_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176419_28	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0176419_28	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0176419_28	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0176419_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0176419_30	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0176419_30	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0176419_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176419_32	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0176419_32	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0176419_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176419_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0176419_33	PHROG	phrog_8680	NA	unknown function
UHGV-0176419_33	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0176419_33	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0176419_33	Pfam	PF14386	NA	DUF4417
UHGV-0176419_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176419_33	Structural annotation	PF14386	NA	NA
UHGV-0176419_35	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0176419_35	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0176419_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0176419_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176419_35	COG	COG2369	NA	NA
UHGV-0176419_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176419_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176419_37	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0176419_37	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0176419_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176419_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0176419_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176419_38	PHROG	phrog_10250	NA	unknown function
UHGV-0176419_38	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0176419_38	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0176419_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176419_38	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176419_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176419_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176419_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176419_39	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0176419_39	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0176419_39	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0176419_39	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0176419_39	Structural annotation	PF16677	NA	NA
UHGV-0176419_40	Structural annotation	PF07374	NA	NA
UHGV-0176419_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0176419_42	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176419_42	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176419_42	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0176419_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0176419_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176419_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0176419_43	PHROG	phrog_3136	NA	unknown function
UHGV-0176419_43	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0176419_43	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0176419_43	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0176419_43	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0176419_47	Structural annotation	PF11417	NA	NA
UHGV-0176419_48	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0176419_48	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176419_48	UniRef90	UniRef90_A0A844D5V0	DnaD domain protein	NA
UHGV-0176419_48	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0176419_48	Pfam	PF19808	NA	DUF6291
UHGV-0176419_48	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0176419_48	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0176419_48	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0176419_49	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0176419_49	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0176419_50	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176419_50	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-0176419_50	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0176419_50	Pfam	PF03837	RecT family	RecT
UHGV-0176419_50	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0176419_50	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0176419_50	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0176419_51	PHROG	phrog_674	NA	unknown function
UHGV-0176419_51	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0176419_51	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-0176419_51	Pfam	PF07083	NA	DUF1351
UHGV-0176419_51	Structural annotation	PF07083	NA	NA
UHGV-0176419_52	Structural annotation	PF14120	NA	NA
UHGV-0176419_54	Structural annotation	PF09537	NA	NA
UHGV-0176419_55	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0176419_56	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0176419_59	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0176419_59	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0176419_61	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0176419_61	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0176419_62	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176419_62	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0176419_62	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0176419_62	eggNOG-mapper	1230342.CTM_16892	Phage antirepressor protein	NA
UHGV-0176419_62	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0176419_62	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176419_62	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0176419_62	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0176419_64	Structural annotation	PF16857, NF001981	NA	NA
UHGV-0176419_66	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176419_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176419_66	UniRef90	UniRef90_A0A564SVW9	HTH-type transcriptional regulator ImmR	NA
UHGV-0176419_66	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0176419_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176419_66	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176419_66	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176419_69	PHROG	phrog_888	NA	unknown function
UHGV-0176419_69	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0176419_69	eggNOG-mapper	999411.HMPREF1092_03312	Short C-terminal domain	NA
UHGV-0176419_69	Pfam	PF14471	NA	DUF4428
UHGV-0176419_69	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0176419_69	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0176419_72	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0176419_72	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0176419_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176419_72	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176419_72	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0176419_73	KOfam	K14059	int; integrase	NA
UHGV-0176419_73	PHROG	phrog_1	integrase	integration and excision
UHGV-0176419_73	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0176419_73	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0176419_73	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176419_73	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0176419_73	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA