UHGV-0176426

Genome information

Genome length 55,005 bps

CDS count 93

Completeness 95.54% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176426
vOTU ID	vOTU-066772
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583347
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.04
Jumbo phage	No

Genome content
Genome length	55,005 bps
GC content	40.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	88.37%
Average CDS length	525.19 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176426_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0176426_2	Structural annotation	PF04606	NA	NA
UHGV-0176426_4	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0176426_4	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0176426_4	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0176426_4	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0176426_4	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0176426_4	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0176426_6	Structural annotation	PF18895, NF009256	NA	NA
UHGV-0176426_7	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0176426_10	UniRef90	UniRef90_A0A553KSI4	Com family DNA-binding transcriptional regulator	NA
UHGV-0176426_10	Pfam	PF10122	NA	Mu-like_Com
UHGV-0176426_10	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0176426_11	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0176426_11	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0176426_11	UniRef90	UniRef90_A0A352SH31	RNA-splicing ligase RtcB	NA
UHGV-0176426_11	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0176426_11	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0176426_11	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0176426_11	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0176426_12	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0176426_12	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0176426_12	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0176426_12	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0176426_12	COG	COG5410	NA	NA
UHGV-0176426_12	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0176426_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176426_13	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0176426_13	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0176426_13	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0176426_13	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0176426_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176426_14	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0176426_14	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176426_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176426_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176426_15	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0176426_16	PHROG	phrog_909	major head protein	head and packaging
UHGV-0176426_16	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0176426_17	PHROG	phrog_29	major head protein	head and packaging
UHGV-0176426_17	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0176426_17	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0176426_17	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0176426_17	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0176426_18	Structural annotation	PF21169	NA	NA
UHGV-0176426_19	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0176426_20	PHROG	phrog_4105	NA	unknown function
UHGV-0176426_20	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0176426_21	PHROG	phrog_443	holin	lysis
UHGV-0176426_21	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0176426_21	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0176426_21	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0176426_21	Structural annotation	PF16945	NA	NA
UHGV-0176426_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0176426_23	PHROG	phrog_1233	NA	unknown function
UHGV-0176426_23	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0176426_23	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-0176426_24	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0176426_24	AcrCatalog	cluster_24841	NA	NA
UHGV-0176426_25	Structural annotation	PF05657	NA	NA
UHGV-0176426_26	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0176426_26	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0176426_29	PHROG	phrog_14030	NA	unknown function
UHGV-0176426_29	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0176426_29	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0176426_29	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0176426_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176426_30	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0176426_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176426_31	PHROG	phrog_9700	NA	unknown function
UHGV-0176426_31	eggNOG-mapper	626418.bglu_1g20650	NA	NA
UHGV-0176426_31	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0176426_31	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0176426_32	PHROG	phrog_1194	NA	unknown function
UHGV-0176426_32	Pfam	PF20458	NA	DUF6711
UHGV-0176426_32	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0176426_33	PHROG	phrog_18190	NA	unknown function
UHGV-0176426_33	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0176426_33	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0176426_33	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0176426_33	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0176426_34	PHROG	phrog_17196	kinase	other
UHGV-0176426_34	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0176426_34	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0176426_37	eggNOG-mapper	610130.Closa_0760	NA	NA
UHGV-0176426_38	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0176426_38	Structural annotation	NF040910	NA	NA
UHGV-0176426_40	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0176426_40	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0176426_40	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0176426_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176426_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0176426_40	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0176426_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176426_41	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0176426_41	eggNOG-mapper	469609.HMPREF0847_00376	DNA-binding helix-turn-helix protein	NA
UHGV-0176426_41	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0176426_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176426_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176426_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176426_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176426_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0176426_42	UniRef90	UniRef90_R6V613	Phage antirepressor protein	NA
UHGV-0176426_42	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0176426_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176426_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176426_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0176426_42	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0176426_45	PHROG	phrog_26861	NA	unknown function
UHGV-0176426_45	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0176426_45	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0176426_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176426_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176426_45	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0176426_47	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0176426_47	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176426_47	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0176426_47	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0176426_47	Pfam	PF13476	AAA domain	AAA_23
UHGV-0176426_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0176426_47	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0176426_50	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0176426_52	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176426_52	UniRef90	UniRef90_R9KLP4	Phage recombination protein Bet	NA
UHGV-0176426_52	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0176426_52	Pfam	PF03837	RecT family	RecT
UHGV-0176426_52	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0176426_52	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0176426_52	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0176426_54	PHROG	phrog_25456	NA	unknown function
UHGV-0176426_56	eggNOG-mapper	658655.HMPREF0988_00883	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0176426_56	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0176426_57	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0176426_57	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0176426_57	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0176426_57	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0176426_57	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0176426_57	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0176426_58	eggNOG-mapper	536232.CLM_1636	NA	NA
UHGV-0176426_58	Structural annotation	PF17457	NA	NA
UHGV-0176426_60	PHROG	phrog_19106	NA	unknown function
UHGV-0176426_60	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0176426_60	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0176426_60	Structural annotation	TIGR01453	NA	NA
UHGV-0176426_61	PHROG	phrog_11769	NA	unknown function
UHGV-0176426_61	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0176426_61	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0176426_61	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0176426_61	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0176426_61	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0176426_62	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0176426_62	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0176426_62	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0176426_62	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0176426_62	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0176426_62	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0176426_62	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176426_62	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0176426_65	PHROG	phrog_21026	NA	unknown function
UHGV-0176426_66	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0176426_69	PHROG	phrog_8684	NA	unknown function
UHGV-0176426_69	UniRef90	UniRef90_F3AAR8	YopX domain-containing protein	NA
UHGV-0176426_69	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0176426_69	Pfam	PF09643	YopX protein	YopX
UHGV-0176426_69	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0176426_69	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0176426_70	Structural annotation	PF14282	NA	NA
UHGV-0176426_72	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0176426_72	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0176426_72	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0176426_72	Structural annotation	PF14354, TIGR03655, TIGR02501	NA	NA
UHGV-0176426_73	PHROG	phrog_874	NA	unknown function
UHGV-0176426_73	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0176426_73	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0176426_75	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0176426_75	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0176426_75	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0176426_75	PADLOC	SspD_00001	SspD	SSP
UHGV-0176426_75	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0176426_75	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0176426_77	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0176426_77	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0176426_77	UniRef90	UniRef90_A0A3R6CGB9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0176426_77	eggNOG-mapper	397291.C804_00950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0176426_77	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0176426_77	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0176426_77	Structural annotation	PF01507, MF_00063, NF010367, COG0175	NA	NA
UHGV-0176426_78	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0176426_78	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0176426_78	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0176426_79	KOfam	K14059	int; integrase	NA
UHGV-0176426_79	PHROG	phrog_1	integrase	integration and excision
UHGV-0176426_79	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0176426_79	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0176426_79	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176426_79	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176426_79	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0176426_81	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0176426_82	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0176426_83	PHROG	phrog_16490	NA	unknown function
UHGV-0176426_83	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0176426_84	PHROG	phrog_20016	NA	unknown function
UHGV-0176426_84	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0176426_84	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0176426_84	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176426_85	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0176426_86	PHROG	phrog_1233	NA	unknown function
UHGV-0176426_86	eggNOG-mapper	397290.C810_01336	NA	NA