UHGV-0176442

Genome information

Genome length 45,502 bps

CDS count 79

Completeness 98.01% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176442
vOTU ID	vOTU-063733
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591875
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.75
Jumbo phage	No

Genome content
Genome length	45,502 bps
GC content	54.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	92.47%
Average CDS length	536.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176442_1	PHROG	phrog_398	NA	unknown function
UHGV-0176442_1	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0176442_1	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0176442_2	PHROG	phrog_4973	NA	unknown function
UHGV-0176442_2	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0176442_2	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0176442_2	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0176442_2	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0176442_6	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176442_6	UniRef90	UniRef90_A0A554J835	Bacteriophage-like protein	NA
UHGV-0176442_6	eggNOG-mapper	1193128.A200_01249	NA	NA
UHGV-0176442_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176442_6	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-0176442_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0176442_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0176442_7	UniRef90	UniRef90_A0A1Q6PWP3	DNA helicase	NA
UHGV-0176442_7	eggNOG-mapper	926692.AZYG01000047_gene2664	Replicative DNA helicase	NA
UHGV-0176442_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0176442_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0176442_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176442_7	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0176442_8	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176442_8	eggNOG-mapper	32057.KB217481_gene8515	NA	NA
UHGV-0176442_8	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0176442_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0176442_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0176442_12	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0176442_13	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0176442_13	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0176442_13	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0176442_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176442_13	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0176442_14	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0176442_14	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0176442_16	PHROG	phrog_924	NA	unknown function
UHGV-0176442_16	UniRef90	UniRef90_A0A7G9WJH9	NA	NA
UHGV-0176442_16	eggNOG-mapper	155864.EDL933_1717	NA	NA
UHGV-0176442_16	Pfam	PF04448	NA	DUF551
UHGV-0176442_16	Structural annotation	NF041588	NA	NA
UHGV-0176442_17	Pfam	PF04448	NA	DUF551
UHGV-0176442_20	Structural annotation	NF033716	NA	NA
UHGV-0176442_21	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0176442_21	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0176442_21	UniRef90	UniRef90_A0A243IBC7	AbrB family transcriptional regulator	NA
UHGV-0176442_21	eggNOG-mapper	1196322.A370_00337	AbrB family	NA
UHGV-0176442_21	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0176442_21	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0176442_21	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0176442_25	PHROG	phrog_6721	NA	unknown function
UHGV-0176442_25	eggNOG-mapper	411473.RUMCAL_00916	NA	NA
UHGV-0176442_25	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0176442_28	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0176442_28	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0176442_28	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0176442_28	eggNOG-mapper	1499689.CCNN01000009_gene2742	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0176442_28	Pfam	PF00692	dUTPase	dUTPase
UHGV-0176442_28	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0176442_28	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0176442_28	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0176442_29	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0176442_29	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0176442_29	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0176442_29	Structural annotation	PF04542, MF_02064, NF006147, COG1191	NA	NA
UHGV-0176442_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176442_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176442_33	UniRef90	UniRef90_A0A316PZZ8	Single-stranded DNA-binding protein	NA
UHGV-0176442_33	eggNOG-mapper	1296662.S5MUT4_9CAUD	Single-strand binding protein family	NA
UHGV-0176442_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176442_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176442_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176442_33	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0176442_34	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0176442_36	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0176442_36	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0176442_36	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0176442_38	eggNOG-mapper	547042.BACCOPRO_02355	NA	NA
UHGV-0176442_41	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0176442_42	PHROG	phrog_3675	NA	unknown function
UHGV-0176442_42	UniRef90	UniRef90_UPI001D08FCA4	YjcQ family protein	NA
UHGV-0176442_42	eggNOG-mapper	397290.C810_01422	YjcQ protein	NA
UHGV-0176442_42	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0176442_42	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0176442_43	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0176442_43	PHROG	phrog_5978	NA	unknown function
UHGV-0176442_43	UniRef90	UniRef90_A0A1V5RLN7	Adenosine monophosphate-protein transferase SoFic	NA
UHGV-0176442_43	eggNOG-mapper	500635.MITSMUL_03290	Fic/DOC family	NA
UHGV-0176442_43	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0176442_43	COG	COG3177	Fic family protein	NA
UHGV-0176442_43	Structural annotation	PF02661, TIGR02613, COG3177	NA	NA
UHGV-0176442_44	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0176442_44	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0176442_44	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0176442_44	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-0176442_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0176442_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0176442_44	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0176442_46	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0176442_46	UniRef90	UniRef90_UPI001D063AE7	phage terminase large subunit	NA
UHGV-0176442_46	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0176442_46	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0176442_46	COG	COG5410	NA	NA
UHGV-0176442_46	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0176442_47	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176442_47	UniRef90	UniRef90_R6H304	AP2 domain-containing protein	NA
UHGV-0176442_47	eggNOG-mapper	397290.C810_05173	NA	NA
UHGV-0176442_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176442_48	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0176442_48	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176442_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176442_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176442_49	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0176442_49	eggNOG-mapper	1121451.DESAM_10288	head morphogenesis protein, SPP1 gp7	NA
UHGV-0176442_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176442_49	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0176442_49	COG	COG2369	NA	NA
UHGV-0176442_49	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176442_52	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176442_52	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0176442_52	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-0176442_52	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0176442_54	UniRef90	UniRef90_A0A1V5X694	Phage gp6-like head-tail connector protein	NA
UHGV-0176442_54	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0176442_54	Structural annotation	TIGR01560	NA	NA
UHGV-0176442_55	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0176442_56	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0176442_57	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0176442_58	PHROG	phrog_158	major tail protein	tail
UHGV-0176442_58	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0176442_58	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0176442_58	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0176442_59	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0176442_59	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0176442_59	Pfam	PF16478	NA	DUF5055
UHGV-0176442_59	Structural annotation	PF16478	NA	NA
UHGV-0176442_60	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0176442_61	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176442_61	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0176442_61	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0176442_62	PHROG	phrog_1194	NA	unknown function
UHGV-0176442_62	eggNOG-mapper	1432847.V5UQS8_9VIRU	NA	NA
UHGV-0176442_62	Pfam	PF20458	NA	DUF6711
UHGV-0176442_62	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0176442_63	PHROG	phrog_6616	tail protein	tail
UHGV-0176442_63	eggNOG-mapper	1123008.KB905702_gene2350	Phage minor structural protein	NA
UHGV-0176442_63	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0176442_63	COG	COG4926	Phage-related protein	NA
UHGV-0176442_65	PHROG	phrog_372	tail protein	tail
UHGV-0176442_65	UniRef90	UniRef90_UPI00067EAD4C	NA	NA
UHGV-0176442_65	eggNOG-mapper	1416759.AYMR01000009_gene3061	NA	NA
UHGV-0176442_65	Pfam	PF05895	NA	DUF859
UHGV-0176442_66	Structural annotation	PF16640	NA	NA
UHGV-0176442_68	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0176442_70	PHROG	phrog_2649	endolysin	lysis
UHGV-0176442_70	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0176442_70	eggNOG-mapper	1246484.D479_19733	Ami_3	NA
UHGV-0176442_70	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0176442_70	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176442_70	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0176442_71	PHROG	phrog_937	hemolysin	other
UHGV-0176442_72	PHROG	phrog_6918	holin	lysis
UHGV-0176442_72	UniRef90	UniRef90_A0A845RBH7	Holin	NA
UHGV-0176442_72	eggNOG-mapper	1203606.HMPREF1526_01929	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0176442_72	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0176442_72	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0176442_76	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0176442_77	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176442_79	Structural annotation	PF02255	NA	NA