UHGV-0176446

Genome information

Genome length 52,508 bps

CDS count 71

Completeness 66.26% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176446
vOTU ID	vOTU-022521
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591873
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.08
Jumbo phage	No

Genome content
Genome length	52,508 bps
GC content	41.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	92.65%
Average CDS length	687.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176446_2	UniRef90	UniRef90_A0A415VGT1	DNA-binding protein	NA
UHGV-0176446_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0176446_2	Structural annotation	PF12728, MF_01155, NF040990, COG3311	NA	NA
UHGV-0176446_3	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176446_3	eggNOG-mapper	129009.Q9MBR9_9CAUD	calcium ion binding	NA
UHGV-0176446_4	eggNOG-mapper	1122985.HMPREF1991_02244	NA	NA
UHGV-0176446_4	Structural annotation	PF20338	NA	NA
UHGV-0176446_5	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0176446_5	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176446_5	UniRef90	UniRef90_A0A415VGU6	AAA_23 domain-containing protein	NA
UHGV-0176446_5	eggNOG-mapper	1121285.AUFK01000002_gene9	nuclear chromosome segregation	NA
UHGV-0176446_5	Pfam	PF13476	AAA domain	AAA_23
UHGV-0176446_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0176446_5	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0176446_6	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176446_6	UniRef90	UniRef90_A0A7H1MQA1	Recombinase RecT	NA
UHGV-0176446_6	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0176446_6	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0176446_7	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0176446_7	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0176446_7	UniRef90	UniRef90_A0A7H1MQA2	MBL fold metallo-hydrolase	NA
UHGV-0176446_7	eggNOG-mapper	86416.Clopa_2515	Metallo-beta-lactamase superfamily	NA
UHGV-0176446_7	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0176446_7	dbAPIS	APIS058	NA	NA
UHGV-0176446_7	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0176446_7	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0176446_9	PHROG	phrog_1365	NA	unknown function
UHGV-0176446_9	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0176446_10	PHROG	phrog_38431	NA	unknown function
UHGV-0176446_10	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0176446_10	eggNOG-mapper	411901.BACCAC_01108	NA	NA
UHGV-0176446_12	PHROG	phrog_28898	NA	unknown function
UHGV-0176446_12	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0176446_12	Structural annotation	PF10781	NA	NA
UHGV-0176446_13	PHROG	phrog_31654	NA	unknown function
UHGV-0176446_13	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0176446_14	PHROG	phrog_16490	NA	unknown function
UHGV-0176446_14	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0176446_14	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0176446_15	UniRef90	UniRef90_UPI001C2B78AF	helix-turn-helix domain-containing protein	NA
UHGV-0176446_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0176446_15	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0176446_17	PHROG	phrog_26448	NA	unknown function
UHGV-0176446_17	eggNOG-mapper	1227276.HMPREF9148_00148	NA	NA
UHGV-0176446_17	Pfam	PF20647	NA	DUF6808
UHGV-0176446_17	Structural annotation	PF20647	NA	NA
UHGV-0176446_18	UniRef90	UniRef90_UPI001F20F464	phage holin family protein	NA
UHGV-0176446_18	eggNOG-mapper	1121097.JCM15093_2703	NA	NA
UHGV-0176446_18	Structural annotation	NF035928	NA	NA
UHGV-0176446_19	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0176446_19	PHROG	phrog_7	endolysin	lysis
UHGV-0176446_19	UniRef90	UniRef90_UPI000D10C356	lysozyme	NA
UHGV-0176446_19	eggNOG-mapper	762968.HMPREF9441_00560	lysozyme	NA
UHGV-0176446_19	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0176446_19	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0176446_19	HAMAP	MF_04110	Endolysin	NA
UHGV-0176446_19	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0176446_20	Structural annotation	PF21146, NF033814	NA	NA
UHGV-0176446_22	UniRef90	UniRef90_A0A3R6C126	Glycosyl transferase	NA
UHGV-0176446_22	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-0176446_22	Structural annotation	PF06197, COG3371	NA	NA
UHGV-0176446_23	UniRef90	UniRef90_UPI001C49131D	NA	NA
UHGV-0176446_23	eggNOG-mapper	411479.BACUNI_00733	NA	NA
UHGV-0176446_23	Pfam	PF14301	NA	DUF4376
UHGV-0176446_23	Structural annotation	PF14301	NA	NA
UHGV-0176446_24	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0176446_24	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0176446_24	UniRef90	UniRef90_R5CA81	Retron-type reverse transcriptase	NA
UHGV-0176446_24	eggNOG-mapper	118005.AWNK01000004_gene1120	reverse transcriptase	NA
UHGV-0176446_24	PADLOC	pfam00078	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; acquisition_associated	CRISPR-CAS
UHGV-0176446_24	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0176446_24	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0176446_24	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0176446_27	PHROG	phrog_17422	NA	unknown function
UHGV-0176446_27	eggNOG-mapper	1392486.JIAF01000004_gene815	NA	NA
UHGV-0176446_27	Structural annotation	PF14594, PF00629, PF03921, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0176446_28	PHROG	phrog_6305	tail protein	tail
UHGV-0176446_28	UniRef90	UniRef90_F3QSN0	Conserved domain protein	NA
UHGV-0176446_28	eggNOG-mapper	357276.EL88_22740	NA	NA
UHGV-0176446_28	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0176446_29	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0176446_29	PHROG	phrog_14295	NA	unknown function
UHGV-0176446_29	eggNOG-mapper	585502.HMPREF0645_2633	tape measure	NA
UHGV-0176446_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0176446_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176446_29	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0176446_31	Structural annotation	PF20336	NA	NA
UHGV-0176446_32	PHROG	phrog_6767	NA	unknown function
UHGV-0176446_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176446_33	PHROG	phrog_5597	NA	unknown function
UHGV-0176446_33	Structural annotation	PF05657	NA	NA
UHGV-0176446_34	Structural annotation	PF19586	NA	NA
UHGV-0176446_35	Structural annotation	PF20449	NA	NA
UHGV-0176446_36	PHROG	phrog_29	major head protein	head and packaging
UHGV-0176446_36	UniRef90	UniRef90_A0A1H4E7R0	Phage major capsid protein E	NA
UHGV-0176446_36	eggNOG-mapper	1227266.HMPREF1551_00512	NA	NA
UHGV-0176446_36	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0176446_37	PHROG	phrog_9196	NA	unknown function
UHGV-0176446_37	Structural annotation	PF21430	NA	NA
UHGV-0176446_38	PHROG	phrog_5824	NA	unknown function
UHGV-0176446_39	Structural annotation	TIGR03066	NA	NA
UHGV-0176446_41	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176446_41	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0176446_41	UniRef90	UniRef90_A0A7H1MQG0	Bro-N domain-containing protein	NA
UHGV-0176446_41	eggNOG-mapper	1347393.HG726026_gene2597	BRO family, N-terminal domain	NA
UHGV-0176446_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176446_41	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176446_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0176446_41	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0176446_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176446_43	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0176446_43	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-0176446_43	eggNOG-mapper	1540257.JQMW01000004_gene443	Phage antirepressor protein KilAC domain	NA
UHGV-0176446_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0176446_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176446_43	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0176446_43	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0176446_45	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0176446_45	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0176446_45	UniRef90	UniRef90_A0A646FRN8	dUTPase domain-containing protein	NA
UHGV-0176446_45	eggNOG-mapper	592026.GCWU0000282_002542	NA	NA
UHGV-0176446_45	Pfam	PF00692	dUTPase	dUTPase
UHGV-0176446_45	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0176446_45	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0176446_47	UniRef90	UniRef90_A0A7H1MQC8	NA	NA
UHGV-0176446_47	eggNOG-mapper	1122986.KB908335_gene1939	Essential for recycling GMP and indirectly, cGMP	NA
UHGV-0176446_47	Pfam	PF04480	NA	DUF559
UHGV-0176446_47	COG	COG0194	Guanylate kinase	NA
UHGV-0176446_47	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-0176446_49	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-0176446_50	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0176446_50	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-0176446_55	UniRef90	UniRef90_A0A7H1MQD5	NA	NA
UHGV-0176446_55	eggNOG-mapper	445970.ALIPUT_02650	NA	NA
UHGV-0176446_55	Structural annotation	PF12987	NA	NA
UHGV-0176446_56	PHROG	phrog_28300	NA	unknown function
UHGV-0176446_56	Structural annotation	PF14445	NA	NA
UHGV-0176446_57	PHROG	phrog_15937	NA	unknown function
UHGV-0176446_58	PHROG	phrog_36980	NA	unknown function
UHGV-0176446_58	eggNOG-mapper	1211813.CAPH01000015_gene733	NA	NA
UHGV-0176446_59	Structural annotation	PF00692, TIGR00576, COG0756	NA	NA
UHGV-0176446_63	PHROG	phrog_824	NA	unknown function
UHGV-0176446_63	UniRef90	UniRef90_A0A7H1MQE6	VRR-NUC domain-containing protein	NA
UHGV-0176446_63	eggNOG-mapper	357276.EL88_08485	VRR_NUC	NA
UHGV-0176446_63	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0176446_67	Structural annotation	PF02237, NF037951	NA	NA
UHGV-0176446_68	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176446_68	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0176446_68	UniRef90	UniRef90_UPI00068A9E49	phage antirepressor KilAC domain-containing protein	NA
UHGV-0176446_68	eggNOG-mapper	1235803.C825_02646	BRO family, N-terminal domain	NA
UHGV-0176446_68	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176446_68	COG	COG3617	Prophage antirepressor	NA
UHGV-0176446_68	Structural annotation	PF03374, PF08346, COG3645, COG3561	NA	NA
UHGV-0176446_69	PHROG	phrog_5377	NA	unknown function
UHGV-0176446_69	eggNOG-mapper	1127692.HMPREF9075_00031	NA	NA
UHGV-0176446_70	Structural annotation	TIGR03066	NA	NA
UHGV-0176446_71	Structural annotation	PF13424, NF011886	NA	NA