UHGV-0176462

Genome information

Genome length 35,297 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176462
vOTU ID	vOTU-011597
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586293
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.41
Jumbo phage	No

Genome content
Genome length	35,297 bps
GC content	45.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.01%
Average CDS length	607.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176462_3	UniRef90	UniRef90_UPI0011CAEDCA	VRR-NUC domain-containing protein	NA
UHGV-0176462_3	eggNOG-mapper	1125725.HMPREF1325_1302	NA	NA
UHGV-0176462_3	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0176462_5	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176462_5	UniRef90	UniRef90_UPI0011CB479F	NA	NA
UHGV-0176462_5	eggNOG-mapper	545694.TREPR_0892	NA	NA
UHGV-0176462_5	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0176462_5	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-0176462_6	PHROG	phrog_15098	NA	unknown function
UHGV-0176462_6	UniRef90	UniRef90_A8ATE5	Gp52	NA
UHGV-0176462_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176462_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176462_7	UniRef90	UniRef90_UPI0011C9D9BC	single-stranded DNA-binding protein	NA
UHGV-0176462_7	eggNOG-mapper	1124982.MSI_22640	Single-stranded DNA-binding protein	NA
UHGV-0176462_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176462_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176462_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176462_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176462_7	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0176462_8	PHROG	phrog_21649	NA	unknown function
UHGV-0176462_8	UniRef90	UniRef90_A0A416D916	Single-stranded DNA-binding protein	NA
UHGV-0176462_8	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0176462_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-0176462_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176462_8	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0176462_9	eggNOG-mapper	1539298.JO41_08365	NA	NA
UHGV-0176462_9	Structural annotation	PF16784	NA	NA
UHGV-0176462_10	UniRef90	UniRef90_A0A7W8LNA3	NA	NA
UHGV-0176462_10	Structural annotation	PF19789	NA	NA
UHGV-0176462_12	eggNOG-mapper	1125725.HMPREF1325_1313	NA	NA
UHGV-0176462_13	PHROG	phrog_15768	NA	unknown function
UHGV-0176462_13	UniRef90	UniRef90_A0A0E2E9N1	NA	NA
UHGV-0176462_13	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0176462_13	Pfam	PF19808	NA	DUF6291
UHGV-0176462_13	Structural annotation	PF19808	NA	NA
UHGV-0176462_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0176462_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176462_14	UniRef90	UniRef90_M2BFI9	AAA domain-containing protein	NA
UHGV-0176462_14	eggNOG-mapper	641147.HMPREF9021_02339	IstB-like ATP binding protein	NA
UHGV-0176462_14	PADLOC	DrmD_00013	DrmD	DISARM
UHGV-0176462_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0176462_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0176462_15	eggNOG-mapper	1539298.JO41_12705	NA	NA
UHGV-0176462_16	UniRef90	UniRef90_A0A843HS63	MazG domain-containing protein	NA
UHGV-0176462_16	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0176462_18	PHROG	phrog_5781	NA	unknown function
UHGV-0176462_18	UniRef90	UniRef90_UPI0018E1716F	NA	NA
UHGV-0176462_18	eggNOG-mapper	742767.HMPREF9456_03346	NA	NA
UHGV-0176462_18	Pfam	PF14359	NA	DUF4406
UHGV-0176462_18	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0176462_20	Structural annotation	PF12961, COG2028	NA	NA
UHGV-0176462_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0176462_21	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0176462_21	UniRef90	UniRef90_U1FPG3	DNA methylase family protein	NA
UHGV-0176462_21	eggNOG-mapper	1125725.HMPREF1325_1319	N-4 methylation of cytosine	NA
UHGV-0176462_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0176462_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176462_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0176462_21	COG	COG0863	DNA modification methylase	NA
UHGV-0176462_21	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0176462_22	UniRef90	UniRef90_A0A884HX15	Cell division control protein	NA
UHGV-0176462_23	UniRef90	UniRef90_E8PPG9	Helix-turn-helix Fis-type	NA
UHGV-0176462_23	eggNOG-mapper	743525.TSC_c10130	NA	NA
UHGV-0176462_23	Structural annotation	PF13022	NA	NA
UHGV-0176462_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176462_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176462_24	UniRef90	UniRef90_M2BSU5	PBSX family phage terminase, large subunit	NA
UHGV-0176462_24	eggNOG-mapper	1125725.HMPREF1325_1321	PBSX family phage terminase, large subunit	NA
UHGV-0176462_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176462_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176462_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176462_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176462_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176462_25	UniRef90	UniRef90_U1FPF4	Portal protein, A118 family	NA
UHGV-0176462_25	eggNOG-mapper	1125725.HMPREF1325_1322	phage minor capsid protein	NA
UHGV-0176462_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176462_26	PHROG	phrog_1233	NA	unknown function
UHGV-0176462_26	eggNOG-mapper	649747.HMPREF0083_05315	NA	NA
UHGV-0176462_26	Structural annotation	PF13058	NA	NA
UHGV-0176462_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176462_28	UniRef90	UniRef90_UPI0011C910CB	minor capsid protein	NA
UHGV-0176462_28	eggNOG-mapper	1539298.JO41_08260	Phage minor capsid protein 2	NA
UHGV-0176462_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176462_28	COG	COG2369	NA	NA
UHGV-0176462_28	Structural annotation	PF06152	NA	NA
UHGV-0176462_29	PHROG	phrog_7104	NA	unknown function
UHGV-0176462_29	UniRef90	UniRef90_A0A139NAX0	NA	NA
UHGV-0176462_29	eggNOG-mapper	585203.SMSK564_1288	NA	NA
UHGV-0176462_30	PHROG	phrog_6473	NA	unknown function
UHGV-0176462_30	eggNOG-mapper	1392493.JIAB01000001_gene2639	NA	NA
UHGV-0176462_33	UniRef90	UniRef90_UPI0011C917A8	pyocin knob domain-containing protein	NA
UHGV-0176462_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0176462_35	PHROG	phrog_9611	endolysin	lysis
UHGV-0176462_35	UniRef90	UniRef90_M2AXT2	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0176462_35	eggNOG-mapper	1125725.HMPREF1325_1326	Ami_2	NA
UHGV-0176462_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0176462_35	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0176462_35	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0176462_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176462_39	UniRef90	UniRef90_U1FQG8	Phage minor structural protein GP20	NA
UHGV-0176462_39	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0176462_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176462_39	Structural annotation	PF06810	NA	NA
UHGV-0176462_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176462_40	UniRef90	UniRef90_R7FBE8	Phage major capsid protein	NA
UHGV-0176462_40	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0176462_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176462_41	eggNOG-mapper	1539298.JO41_08170	NA	NA
UHGV-0176462_42	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0176462_42	eggNOG-mapper	1539298.JO41_08190	Minor capsid protein	NA
UHGV-0176462_42	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0176462_42	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0176462_42	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0176462_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176462_43	UniRef90	UniRef90_U2N122	Minor capsid protein	NA
UHGV-0176462_43	eggNOG-mapper	1539298.JO41_08160	Minor capsid protein	NA
UHGV-0176462_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176462_43	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0176462_44	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0176462_44	UniRef90	UniRef90_UPI0011C89F23	minor capsid protein	NA
UHGV-0176462_44	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0176462_45	PHROG	phrog_3099	NA	unknown function
UHGV-0176462_45	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0176462_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0176462_46	PHROG	phrog_706	NA	unknown function
UHGV-0176462_46	UniRef90	UniRef90_UPI0011C87A99	Gp15 family bacteriophage protein	NA
UHGV-0176462_46	eggNOG-mapper	1539298.JO41_08145	Bacteriophage Gp15 protein	NA
UHGV-0176462_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176462_46	Structural annotation	PF06854	NA	NA
UHGV-0176462_47	UniRef90	UniRef90_A0A7W8GBU4	Chromosome segregation ATPase	NA
UHGV-0176462_47	eggNOG-mapper	1125725.HMPREF1325_1340	nuclear chromosome segregation	NA
UHGV-0176462_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0176462_47	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0176462_48	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0176462_48	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0176462_49	eggNOG-mapper	1539298.JO41_08130	NA	NA
UHGV-0176462_49	Structural annotation	PF08875, MF_00833, TIGR01600, COG4672	NA	NA
UHGV-0176462_50	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0176462_50	PHROG	phrog_329	minor tail protein	tail
UHGV-0176462_50	UniRef90	UniRef90_A0A0A0X0T9	NlpC/P60 domain-containing protein	NA
UHGV-0176462_50	eggNOG-mapper	1539298.JO41_08125	NlpC/P60 family	NA
UHGV-0176462_50	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0176462_50	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0176462_51	eggNOG-mapper	1539298.JO41_08120	cellulase activity	NA
UHGV-0176462_51	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0176462_51	Structural annotation	PF13550, PF03658, PF14879, MF_00460, NF040662, NF005028, COG4733, COG2914	NA	NA
UHGV-0176462_52	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0176462_52	UniRef90	UniRef90_A0A356JWH0	Glycoside hydrolase	NA
UHGV-0176462_52	eggNOG-mapper	869209.Tresu_2075	NlpC/P60 family	NA
UHGV-0176462_52	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0176462_52	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0176462_55	PHROG	phrog_8463	transposase	integration and excision
UHGV-0176462_55	UniRef90	UniRef90_A0A843HM74	ISNCY family transposase	NA
UHGV-0176462_55	eggNOG-mapper	857293.CAAU_1407	PFAM Integrase catalytic	NA
UHGV-0176462_55	NCBIFam	NF033594.2	ISNCY family transposase	NA
UHGV-0176462_55	COG	COG2801	Transposase InsO and inactivated derivatives	NA