UHGV-0176478

Genome information

Genome length 41,344 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176478
vOTU ID	vOTU-046583
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_564992
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	83.57
Jumbo phage	No

Genome content
Genome length	41,344 bps
GC content	39.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	88.03%
Average CDS length	546.54 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176478_1	PHROG	phrog_1009	NA	unknown function
UHGV-0176478_2	PHROG	phrog_2609	holin	lysis
UHGV-0176478_2	UniRef90	UniRef90_UPI001C2153F7	phage holin, LLH family	NA
UHGV-0176478_2	eggNOG-mapper	1423814.HMPREF0549_1806	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0176478_2	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0176478_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0176478_3	PHROG	phrog_291	endolysin	lysis
UHGV-0176478_3	UniRef90	UniRef90_UPI001C2389E0	glycoside hydrolase family 25	NA
UHGV-0176478_3	eggNOG-mapper	349123.Lreu23DRAFT_3975	Glycosyl hydrolases family 25	NA
UHGV-0176478_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176478_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176478_3	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-0176478_4	eggNOG-mapper	349123.Lreu23DRAFT_3973	NA	NA
UHGV-0176478_5	KOfam	K14059	int; integrase	NA
UHGV-0176478_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0176478_5	UniRef90	UniRef90_A0A4Q0CVP8	Site-specific integrase	NA
UHGV-0176478_5	eggNOG-mapper	334390.LAF_0460	Belongs to the 'phage' integrase family	NA
UHGV-0176478_5	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0176478_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0176478_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176478_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176478_5	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0176478_6	PHROG	phrog_888	NA	unknown function
UHGV-0176478_6	UniRef90	UniRef90_A0A7X2G5A2	SHOCT domain-containing protein	NA
UHGV-0176478_6	eggNOG-mapper	1423775.BAMN01000001_gene2568	NA	NA
UHGV-0176478_6	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0176478_7	PHROG	phrog_87	metallo-protease	other
UHGV-0176478_7	UniRef90	UniRef90_UPI00021A2F58	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0176478_7	eggNOG-mapper	944562.HMPREF9102_0388	Zn peptidase	NA
UHGV-0176478_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0176478_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0176478_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0176478_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176478_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176478_8	UniRef90	UniRef90_A0A244CDL7	Transcriptional regulator	NA
UHGV-0176478_8	eggNOG-mapper	944562.HMPREF9102_0389	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0176478_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176478_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176478_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176478_9	UniRef90	UniRef90_A0A256V9G3	Helix-turn-helix domain-containing protein	NA
UHGV-0176478_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176478_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176478_10	PHROG	phrog_8019	NA	unknown function
UHGV-0176478_14	PHROG	phrog_9188	NA	unknown function
UHGV-0176478_15	PHROG	phrog_823	NA	unknown function
UHGV-0176478_15	UniRef90	UniRef90_UPI0015BC1923	NA	NA
UHGV-0176478_15	eggNOG-mapper	1293597.BN147_08445	NA	NA
UHGV-0176478_15	Pfam	PF05595	NA	DUF771
UHGV-0176478_15	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0176478_17	PHROG	phrog_19314	NA	unknown function
UHGV-0176478_18	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176478_18	UniRef90	UniRef90_UPI000C807C4A	NUMOD4 domain-containing protein	NA
UHGV-0176478_18	eggNOG-mapper	568703.LGG_01122	NUMOD4 motif	NA
UHGV-0176478_18	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0176478_18	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0176478_18	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0176478_21	UniRef90	UniRef90_UPI0015BFAD45	6-phospho-beta-glucosidase	NA
UHGV-0176478_22	PHROG	phrog_8492	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176478_22	UniRef90	UniRef90_UPI0015BA2907	NA	NA
UHGV-0176478_22	eggNOG-mapper	930946.AEOP01000051_gene630	NA	NA
UHGV-0176478_22	Pfam	PF06378	NA	DUF1071
UHGV-0176478_23	PHROG	phrog_398	NA	unknown function
UHGV-0176478_23	UniRef90	UniRef90_UPI00136CF42E	putative HNHc nuclease	NA
UHGV-0176478_23	eggNOG-mapper	1423814.HMPREF0549_1764	Putative HNHc nuclease	NA
UHGV-0176478_23	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0176478_23	Structural annotation	PF16784	NA	NA
UHGV-0176478_24	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176478_24	UniRef90	UniRef90_A0A1Z5IZR7	Phage DNA replication protein	NA
UHGV-0176478_24	eggNOG-mapper	1423807.BACO01000085_gene2475	DnaD domain protein	NA
UHGV-0176478_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176478_25	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0176478_25	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176478_25	UniRef90	UniRef90_S5NE39	AAA domain-containing protein	NA
UHGV-0176478_25	eggNOG-mapper	1400520.LFAB_09190	IstB-like ATP binding protein	NA
UHGV-0176478_25	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0176478_25	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0176478_25	Structural annotation	PF01695, MF_01509, NF005304, COG1484	NA	NA
UHGV-0176478_35	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0176478_35	eggNOG-mapper	1423814.HMPREF0549_0097	NA	NA
UHGV-0176478_35	Structural annotation	TIGR01637	NA	NA
UHGV-0176478_39	PHROG	phrog_1233	NA	unknown function
UHGV-0176478_39	UniRef90	UniRef90_UPI001C000A83	mitochondrial inner membrane protease ATP23	NA
UHGV-0176478_39	eggNOG-mapper	713605.ADHG01000003_gene719	NA	NA
UHGV-0176478_39	Structural annotation	PF06114	NA	NA
UHGV-0176478_40	UniRef90	UniRef90_UPI0016664076	transmembrane Fragile-X-F protein	NA
UHGV-0176478_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0176478_41	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0176478_41	UniRef90	UniRef90_UPI001782D995	DNA modification methylase	NA
UHGV-0176478_41	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0176478_41	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0176478_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176478_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0176478_41	COG	COG0863	DNA modification methylase	NA
UHGV-0176478_41	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0176478_42	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0176478_42	UniRef90	UniRef90_UPI0017831B6C	small terminase subunit	NA
UHGV-0176478_42	eggNOG-mapper	139871.A9D9R6_9VIRU	endonuclease activity	NA
UHGV-0176478_42	Structural annotation	PF13022	NA	NA
UHGV-0176478_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176478_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176478_43	UniRef90	UniRef90_UPI001785810E	PBSX family phage terminase large subunit	NA
UHGV-0176478_43	eggNOG-mapper	52979.O03927_9CAUD	Phage terminase large subunit	NA
UHGV-0176478_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176478_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176478_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176478_43	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176478_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176478_44	UniRef90	UniRef90_UPI001F1D8B2E	phage portal protein	NA
UHGV-0176478_44	eggNOG-mapper	52979.O03928_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176478_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176478_44	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0176478_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176478_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176478_45	UniRef90	UniRef90_A0A317GJ96	Capsid protein	NA
UHGV-0176478_45	eggNOG-mapper	334390.LAF_0931	Phage minor capsid protein 2	NA
UHGV-0176478_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176478_45	COG	COG2369	NA	NA
UHGV-0176478_45	Structural annotation	PF06152	NA	NA
UHGV-0176478_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176478_47	UniRef90	UniRef90_UPI00177F4161	phage scaffolding protein	NA
UHGV-0176478_47	eggNOG-mapper	1104325.M7W_1354	Phage minor structural protein GP20	NA
UHGV-0176478_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176478_47	Structural annotation	PF06810	NA	NA
UHGV-0176478_48	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176478_48	UniRef90	UniRef90_A0A0R2AEB8	NA	NA
UHGV-0176478_48	eggNOG-mapper	46256.BBIK01000004_gene692	NA	NA
UHGV-0176478_48	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176478_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176478_50	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0176478_50	UniRef90	UniRef90_A0A317GI63	Capsid protein	NA
UHGV-0176478_50	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-0176478_50	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0176478_50	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0176478_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176478_51	UniRef90	UniRef90_UPI00178385DE	minor capsid protein	NA
UHGV-0176478_51	eggNOG-mapper	1423767.BALU01000006_gene770	Minor capsid protein	NA
UHGV-0176478_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176478_51	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0176478_52	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0176478_52	UniRef90	UniRef90_A0A848PC31	Minor capsid protein	NA
UHGV-0176478_52	eggNOG-mapper	52979.O03934_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0176478_52	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0176478_52	Structural annotation	PF12691	NA	NA
UHGV-0176478_53	PHROG	phrog_820	major tail protein	tail
UHGV-0176478_53	UniRef90	UniRef90_UPI001CDD861A	capsid protein	NA
UHGV-0176478_53	eggNOG-mapper	1140001.I571_02115	domain, Protein	NA
UHGV-0176478_53	COG	COG5492	NA	NA
UHGV-0176478_54	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-0176478_54	Structural annotation	PF10666	NA	NA
UHGV-0176478_55	PHROG	phrog_706	NA	unknown function
UHGV-0176478_55	UniRef90	UniRef90_UPI001785BB45	Gp15 family bacteriophage protein	NA
UHGV-0176478_55	eggNOG-mapper	1158614.I592_01129	Bacteriophage Gp15 protein	NA
UHGV-0176478_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176478_55	Structural annotation	PF06854	NA	NA
UHGV-0176478_56	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0176478_56	UniRef90	UniRef90_UPI0017826886	tape measure protein	NA
UHGV-0176478_56	eggNOG-mapper	52979.O03937_9CAUD	peptidoglycan catabolic process	NA
UHGV-0176478_56	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176478_56	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176478_56	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-0176478_57	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176478_57	UniRef90	UniRef90_UPI001C2455DF	phage tail family protein	NA
UHGV-0176478_57	eggNOG-mapper	438780.D2KRB8_9CAUD	Phage tail protein	NA
UHGV-0176478_57	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0176478_57	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0176478_58	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0176478_58	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0176478_58	UniRef90	UniRef90_UPI001C23E487	phage tail protein	NA
UHGV-0176478_58	eggNOG-mapper	862514.HMPREF0623_0298	Prophage endopeptidase tail	NA
UHGV-0176478_58	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176478_58	COG	COG4926	Phage-related protein	NA
UHGV-0176478_58	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0176478_60	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0176478_60	UniRef90	UniRef90_UPI001F2D0A71	NA	NA
UHGV-0176478_60	eggNOG-mapper	944562.HMPREF9102_0426	Calcineurin-like phosphoesterase	NA
UHGV-0176478_60	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0176478_60	Structural annotation	PF18667, PF10651	NA	NA
UHGV-0176478_61	PHROG	phrog_341	major tail protein	tail
UHGV-0176478_61	UniRef90	UniRef90_A0A7W3TZW5	Ig-like domain-containing protein	NA
UHGV-0176478_61	eggNOG-mapper	411474.COPEUT_01261	family 16	NA
UHGV-0176478_61	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0176478_61	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0176478_61	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0176478_61	Structural annotation	PF02368, PF07495, MF_04116, COG5492	NA	NA
UHGV-0176478_62	UniRef90	UniRef90_C2ERN7	BppU_IgG domain-containing protein	NA
UHGV-0176478_62	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0176478_62	COG	COG5599	Protein tyrosine phosphatase	NA
UHGV-0176478_62	Structural annotation	PF18667	NA	NA
UHGV-0176478_63	Structural annotation	PF08931	NA	NA
UHGV-0176478_64	PHROG	phrog_1766	tail fiber protein	tail
UHGV-0176478_65	UniRef90	UniRef90_A0A3G3E977	XkdX family protein	NA
UHGV-0176478_65	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0176478_66	KOfam	K07483	K07483; transposase	NA
UHGV-0176478_66	PHROG	phrog_151	transposase	integration and excision
UHGV-0176478_66	UniRef90	UniRef90_A0A5M9YQ06	Transposase	NA
UHGV-0176478_66	eggNOG-mapper	525309.HMPREF0494_1204	Helix-turn-helix domain	NA
UHGV-0176478_66	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0176478_66	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0176478_66	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0176478_66	Structural annotation	PF13518, PF13384, NF038385, COG2963	NA	NA
UHGV-0176478_67	KOfam	K07497	K07497; putative transposase	NA
UHGV-0176478_67	PHROG	phrog_157	transposase	integration and excision
UHGV-0176478_67	UniRef90	UniRef90_E3CA69	Integrase core domain protein (Fragment)	NA
UHGV-0176478_67	eggNOG-mapper	908339.HMPREF9265_0225	PFAM Integrase catalytic region	NA
UHGV-0176478_67	Pfam	PF00665	Integrase core domain	rve
UHGV-0176478_67	Pfam	PF13333	Integrase core domain	rve_2
UHGV-0176478_67	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0176478_67	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0176478_67	Structural annotation	PF00665, PF13276, NF033516, COG2801	NA	NA