UHGV-0176510

Genome information

Genome length 40,719 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176510
vOTU ID	vOTU-046585
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586609
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.37
Jumbo phage	No

Genome content
Genome length	40,719 bps
GC content	52.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	88.79%
Average CDS length	535.02 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176510_2	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176510_2	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0176510_2	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0176510_2	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0176510_4	PHROG	phrog_17977	NA	unknown function
UHGV-0176510_4	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0176510_4	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0176510_5	Structural annotation	PF13554	NA	NA
UHGV-0176510_6	PHROG	phrog_885	major tail protein	tail
UHGV-0176510_6	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0176510_6	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0176510_6	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0176510_6	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176510_9	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0176510_9	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0176510_9	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0176510_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176510_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176510_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176510_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176510_10	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-0176510_10	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0176510_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176510_10	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0176510_11	PHROG	phrog_3558	tail protein	tail
UHGV-0176510_11	UniRef90	UniRef90_A0A3E2U3C8	Prophage_tail domain-containing protein	NA
UHGV-0176510_11	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0176510_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176510_11	COG	COG4926	Phage-related protein	NA
UHGV-0176510_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0176510_12	Structural annotation	PF05096, MF_03141, NF035926, COG3823	NA	NA
UHGV-0176510_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0176510_13	PHROG	phrog_291	endolysin	lysis
UHGV-0176510_13	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0176510_13	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0176510_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176510_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176510_13	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0176510_15	PHROG	phrog_15303	NA	unknown function
UHGV-0176510_18	eggNOG-mapper	1384065.JAGS01000001_gene3265	sequence-specific DNA binding	NA
UHGV-0176510_18	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0176510_18	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0176510_20	PHROG	phrog_3754	NA	unknown function
UHGV-0176510_20	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0176510_21	PHROG	phrog_21718	NA	unknown function
UHGV-0176510_21	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176510_22	PHROG	phrog_22984	NA	unknown function
UHGV-0176510_23	PHROG	phrog_16490	NA	unknown function
UHGV-0176510_23	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0176510_25	PHROG	phrog_20016	NA	unknown function
UHGV-0176510_25	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0176510_25	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0176510_25	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176510_26	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0176510_26	Structural annotation	PF12510	NA	NA
UHGV-0176510_28	KOfam	K14059	int; integrase	NA
UHGV-0176510_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0176510_28	UniRef90	UniRef90_A0A174D176	Tyrosine recombinase XerD	NA
UHGV-0176510_28	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0176510_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176510_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0176510_28	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0176510_29	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0176510_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176510_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176510_29	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0176510_32	PHROG	phrog_888	NA	unknown function
UHGV-0176510_32	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0176510_32	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0176510_32	Pfam	PF14471	NA	DUF4428
UHGV-0176510_32	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0176510_32	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0176510_35	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0176510_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176510_36	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0176510_36	eggNOG-mapper	699218.HMPREF0889_0208	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176510_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176510_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176510_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0176510_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176510_37	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0176510_37	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0176510_37	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0176510_37	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0176510_37	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0176510_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176510_38	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0176510_38	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0176510_38	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0176510_38	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0176510_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176510_38	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0176510_38	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0176510_38	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0176510_40	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0176510_42	Structural annotation	PF07870, COG3461	NA	NA
UHGV-0176510_44	Structural annotation	PF14120	NA	NA
UHGV-0176510_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176510_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176510_47	UniRef90	UniRef90_A0A844DI52	Single-stranded DNA-binding protein	NA
UHGV-0176510_47	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0176510_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176510_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176510_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176510_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176510_48	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0176510_48	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0176510_48	UniRef90	UniRef90_UPI001CBE9731	DnaD domain protein	NA
UHGV-0176510_48	eggNOG-mapper	447909.A6M985_9VIRU	calcium ion binding	NA
UHGV-0176510_48	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0176510_48	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0176510_48	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0176510_49	Structural annotation	PF11417	NA	NA
UHGV-0176510_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0176510_50	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0176510_50	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0176510_50	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0176510_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0176510_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176510_53	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0176510_53	Structural annotation	NF041588	NA	NA
UHGV-0176510_54	PHROG	phrog_6568	NA	unknown function
UHGV-0176510_54	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0176510_55	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0176510_55	UniRef90	UniRef90_A0A1Y4MJF4	NA	NA
UHGV-0176510_55	eggNOG-mapper	1203606.HMPREF1526_01892	NA	NA
UHGV-0176510_55	Structural annotation	PF18895, MF_01019, NF002747	NA	NA
UHGV-0176510_56	PHROG	phrog_3253	NA	unknown function
UHGV-0176510_56	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-0176510_56	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0176510_56	Structural annotation	PF18618	NA	NA
UHGV-0176510_57	KOfam	K03700	recU; recombination protein U	NA
UHGV-0176510_57	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176510_57	UniRef90	UniRef90_UPI001C036091	Holliday junction resolvase RecU	NA
UHGV-0176510_57	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0176510_57	Pfam	PF03838	Recombination protein U	RecU
UHGV-0176510_57	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0176510_57	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0176510_58	Structural annotation	PF14354	NA	NA
UHGV-0176510_59	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176510_59	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0176510_59	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0176510_60	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0176510_60	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0176510_60	UniRef90	UniRef90_UPI0012DE0D94	site-specific DNA-methyltransferase	NA
UHGV-0176510_60	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0176510_60	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0176510_60	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176510_60	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0176510_60	COG	COG0863	DNA modification methylase	NA
UHGV-0176510_60	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0176510_61	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176510_61	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176510_61	UniRef90	UniRef90_A0A1Y4ES07	Terminase	NA
UHGV-0176510_61	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0176510_61	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176510_61	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176510_61	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176510_61	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176510_62	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176510_62	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0176510_62	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176510_62	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176510_62	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0176510_64	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0176510_64	UniRef90	UniRef90_A0A844DBI4	Phage_Mu_F domain-containing protein	NA
UHGV-0176510_64	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0176510_64	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176510_64	COG	COG2369	NA	NA
UHGV-0176510_64	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176510_67	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176510_67	UniRef90	UniRef90_A0A844DDB3	HK97 gp10 family phage protein	NA
UHGV-0176510_67	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0176510_67	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176510_67	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA