UHGV-0176538

Genome information

Genome length 25,258 bps

CDS count 31

Completeness 71.14% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176538
vOTU ID	vOTU-022522
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583576
BioSample	SAMN09781759
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.81
Jumbo phage	No

Genome content
Genome length	25,258 bps
GC content	37.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	94.99%
Average CDS length	777.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176538_1	PHROG	phrog_8577	endolysin	lysis
UHGV-0176538_1	UniRef90	UniRef90_A0A6G6XPZ3	Peptidoglycan hydrolase	NA
UHGV-0176538_1	eggNOG-mapper	1035184.HMPREF1042_1207	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176538_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0176538_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176538_2	PHROG	phrog_443	holin	lysis
UHGV-0176538_2	UniRef90	UniRef90_UPI00191F102F	holin	NA
UHGV-0176538_2	eggNOG-mapper	936154.STP_0842	NA	NA
UHGV-0176538_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0176538_2	Structural annotation	PF16945	NA	NA
UHGV-0176538_3	PHROG	phrog_18008	NA	unknown function
UHGV-0176538_4	PHROG	phrog_2566	NA	unknown function
UHGV-0176538_4	UniRef90	UniRef90_A0A139N2Q3	Orf49	NA
UHGV-0176538_4	eggNOG-mapper	120574.Q94M32_9CAUD	NA	NA
UHGV-0176538_5	PHROG	phrog_372	tail protein	tail
UHGV-0176538_5	UniRef90	UniRef90_UPI001BDA6DEB	NA	NA
UHGV-0176538_5	eggNOG-mapper	1225805.J7KK23_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0176538_5	Pfam	PF05895	NA	DUF859
UHGV-0176538_5	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0176538_6	PHROG	phrog_10693	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0176538_6	UniRef90	UniRef90_UPI000CF4EB66	phage tail protein	NA
UHGV-0176538_7	PHROG	phrog_7926	helicase subunit of the DNA excision repair complex	DNA, RNA and nucleotide metabolism
UHGV-0176538_7	Structural annotation	PF16857	NA	NA
UHGV-0176538_8	PHROG	phrog_3267	tail protein	tail
UHGV-0176538_8	UniRef90	UniRef90_A0A239RFZ5	Ig-like domain-containing protein	NA
UHGV-0176538_8	eggNOG-mapper	85154.O34074_BPO12	NA	NA
UHGV-0176538_8	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-0176538_9	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0176538_9	UniRef90	UniRef90_A0A516KPV3	Putative tail fiber protein	NA
UHGV-0176538_9	eggNOG-mapper	35344.A0A097PBF5_BPT12	amidase activity	NA
UHGV-0176538_9	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0176538_9	Pfam	PF05257	CHAP domain	CHAP
UHGV-0176538_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176538_9	Structural annotation	PF14594, PF19081, NF006359, TIGR01665, COG3500, COG3942, COG1705, COG5456	NA	NA
UHGV-0176538_10	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0176538_10	UniRef90	UniRef90_A0A516KPW7	Putative host-specificity tail protein	NA
UHGV-0176538_10	eggNOG-mapper	78541.O80180_9CAUD	Phage tail protein	NA
UHGV-0176538_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0176538_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0176538_10	Structural annotation	PF05709, PF03388, TIGR01633, NF041449, NF033675, COG4722, COG3506	NA	NA
UHGV-0176538_11	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0176538_11	UniRef90	UniRef90_A0A516KPV4	Putative tape-measure protein	NA
UHGV-0176538_11	eggNOG-mapper	35344.A0A097PAU2_BPT12	NA	NA
UHGV-0176538_11	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0176538_12	PHROG	phrog_7423	NA	unknown function
UHGV-0176538_12	UniRef90	UniRef90_A0A7Z8ZWF9	NA	NA
UHGV-0176538_12	eggNOG-mapper	1347392.CCEZ01000005_gene1243	NA	NA
UHGV-0176538_13	PHROG	phrog_2115	tail protein	tail
UHGV-0176538_13	UniRef90	UniRef90_C5WIA0	NA	NA
UHGV-0176538_13	eggNOG-mapper	1235792.C808_05346	NA	NA
UHGV-0176538_13	Structural annotation	PF11836	NA	NA
UHGV-0176538_14	PHROG	phrog_1407	major tail protein	tail
UHGV-0176538_14	UniRef90	UniRef90_A0A516KPV5	Major tail protein	NA
UHGV-0176538_14	eggNOG-mapper	936154.STP_1264	Phage tail tube protein	NA
UHGV-0176538_14	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0176538_14	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0176538_14	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0176538_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0176538_15	PHROG	phrog_176	tail terminator	connector
UHGV-0176538_15	UniRef90	UniRef90_C5WIA2	Antigen B	NA
UHGV-0176538_15	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-0176538_15	Pfam	PF16807	NA	DUF5072
UHGV-0176538_15	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0176538_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176538_16	UniRef90	UniRef90_A0A516KPV8	Putative tail protein	NA
UHGV-0176538_16	eggNOG-mapper	1347392.CCEZ01000005_gene1239	NA	NA
UHGV-0176538_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0176538_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176538_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0176538_18	UniRef90	UniRef90_A0A516KPV2	Putative head-tail connector	NA
UHGV-0176538_18	eggNOG-mapper	936154.STP_1267	NA	NA
UHGV-0176538_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0176538_18	Structural annotation	PF05135	NA	NA
UHGV-0176538_19	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0176538_19	eggNOG-mapper	1405498.SSIM_04855	Rho termination factor, N-terminal domain	NA
UHGV-0176538_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176538_20	UniRef90	UniRef90_A0A097PAW2	Putative capsid protein	NA
UHGV-0176538_20	eggNOG-mapper	936154.STP_1268	NA	NA
UHGV-0176538_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176538_21	UniRef90	UniRef90_A0A516KPU9	Major head protein	NA
UHGV-0176538_21	eggNOG-mapper	936154.STP_1268	NA	NA
UHGV-0176538_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0176538_22	UniRef90	UniRef90_A0A516KPT7	Putative scaffold protein	NA
UHGV-0176538_22	eggNOG-mapper	936154.STP_1269	NA	NA
UHGV-0176538_22	Pfam	PF14265	NA	DUF4355
UHGV-0176538_22	Structural annotation	PF14265	NA	NA
UHGV-0176538_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0176538_24	UniRef90	UniRef90_A0A516KPU0	Putative head morphogenesis protein	NA
UHGV-0176538_24	eggNOG-mapper	936154.STP_1290	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0176538_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176538_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0176538_24	COG	COG2369	NA	NA
UHGV-0176538_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176538_25	UniRef90	UniRef90_A0A516KPT9	Putative portal protein	NA
UHGV-0176538_25	eggNOG-mapper	35344.A0A097PAT2_BPT12	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176538_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176538_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0176538_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0176538_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176538_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176538_26	UniRef90	UniRef90_A0A516KPW3	Terminase, large subunit	NA
UHGV-0176538_26	eggNOG-mapper	35344.A0A097PAV9_BPT12	Phage terminase large subunit	NA
UHGV-0176538_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176538_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176538_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176538_26	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0176538_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176538_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0176538_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0176538_27	UniRef90	UniRef90_A0A516KPU2	Putative terminase small subunit	NA
UHGV-0176538_27	eggNOG-mapper	257314.LJ_1440	Terminase small subunit	NA
UHGV-0176538_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0176538_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0176538_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0176538_28	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176538_28	UniRef90	UniRef90_A0A516KPY2	Metallophos_2 domain-containing protein	NA
UHGV-0176538_28	eggNOG-mapper	1589270.A0A0B5A5X7_9CAUD	NA	NA
UHGV-0176538_28	Pfam	PF12850	Calcineurin-like phosphoesterase superfamily domain	Metallophos_2
UHGV-0176538_28	Structural annotation	PF12850, MF_00905, NF008359, COG2908	NA	NA