UHGV-0176577

Genome information

Genome length 19,722 bps

CDS count 24

Completeness 78.11% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176577
vOTU ID	vOTU-028905
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591053
BioSample	SAMN09781781
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.18
Jumbo phage	No

Genome content
Genome length	19,722 bps
GC content	32.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	92.00%
Average CDS length	757.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176577_4	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176577_4	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0176577_4	Structural annotation	PF17427	NA	NA
UHGV-0176577_5	Structural annotation	PF05435	NA	NA
UHGV-0176577_6	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0176577_6	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0176577_6	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-0176577_6	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0176577_6	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0176577_6	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0176577_9	Pfam	PF11418	Phi29 scaffolding protein	Scaffolding_pro
UHGV-0176577_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0176577_10	UniRef90	UniRef90_Q37888	Major capsid protein	NA
UHGV-0176577_10	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0176577_10	Structural annotation	PF19821, PF18957, MF_04119, TIGR04387, NF038186, COG4834	NA	NA
UHGV-0176577_11	PHROG	phrog_7547	NA	unknown function
UHGV-0176577_11	eggNOG-mapper	1158608.I583_02857	NA	NA
UHGV-0176577_12	PHROG	phrog_7782	NA	unknown function
UHGV-0176577_12	eggNOG-mapper	1158609.I586_02614	NA	NA
UHGV-0176577_12	Structural annotation	PF16578	NA	NA
UHGV-0176577_13	PHROG	phrog_199	holin	lysis
UHGV-0176577_13	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-0176577_13	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0176577_13	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0176577_13	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0176577_14	Structural annotation	PF12708, TIGR03808, COG5434	NA	NA
UHGV-0176577_16	PHROG	phrog_11037	NA	unknown function
UHGV-0176577_16	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0176577_16	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0176577_16	COG	COG3942	Surface antigen	NA
UHGV-0176577_16	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0176577_17	PHROG	phrog_2248	tail protein	tail
UHGV-0176577_17	UniRef90	UniRef90_A0A843HAY7	Caud_tail_N domain-containing protein	NA
UHGV-0176577_17	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0176577_17	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0176577_17	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0176577_17	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0176577_18	PHROG	phrog_2038	upper collar connector	connector
UHGV-0176577_18	UniRef90	UniRef90_A0A1X9SGN4	Upper collar protein	NA
UHGV-0176577_18	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0176577_18	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0176577_18	Structural annotation	PF05352, MF_04135, TIGR01538, COG4695	NA	NA
UHGV-0176577_19	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0176577_19	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0176577_20	PHROG	phrog_1309	endolysin	lysis
UHGV-0176577_20	UniRef90	UniRef90_A8RBX0	CHAP domain protein	NA
UHGV-0176577_20	eggNOG-mapper	428127.EUBDOL_01204	hydrolase, family 25	NA
UHGV-0176577_20	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0176577_20	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176577_20	Structural annotation	PF08460, PF06940, COG3942	NA	NA
UHGV-0176577_21	PHROG	phrog_2150	terminase	head and packaging
UHGV-0176577_21	UniRef90	UniRef90_UPI0009B42C61	phage DNA encapsidation protein	NA
UHGV-0176577_21	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0176577_21	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0176577_21	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176577_24	Structural annotation	TIGR02436	NA	NA