UHGV-0176580

Genome information

Genome length 30,954 bps

CDS count 45

Completeness 95.42% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176580
vOTU ID	vOTU-066580
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576788
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.65
Jumbo phage	No

Genome content
Genome length	30,954 bps
GC content	48.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.23%
Average CDS length	621.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176580_2	PHROG	phrog_1220	head protein	head and packaging
UHGV-0176580_2	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0176580_2	Structural annotation	PF20747	NA	NA
UHGV-0176580_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0176580_3	UniRef90	UniRef90_UPI001A9C11C8	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0176580_3	eggNOG-mapper	536232.CLM_2044	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0176580_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0176580_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0176580_4	PHROG	phrog_36410	NA	unknown function
UHGV-0176580_4	UniRef90	UniRef90_UPI00189A2D41	phage tail family protein	NA
UHGV-0176580_4	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0176580_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0176580_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176580_4	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0176580_5	KOfam	K06675	SMC4; structural maintenance of chromosome 4	NA
UHGV-0176580_5	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0176580_5	UniRef90	UniRef90_UPI00189C4E6E	phage tail tape measure protein	NA
UHGV-0176580_5	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-0176580_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0176580_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0176580_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0176580_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0176580_6	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0176580_7	PHROG	phrog_88	major tail protein	tail
UHGV-0176580_7	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0176580_7	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0176580_7	COG	COG5492	NA	NA
UHGV-0176580_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0176580_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176580_8	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0176580_8	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0176580_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0176580_9	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0176580_9	Structural annotation	PF05657	NA	NA
UHGV-0176580_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0176580_10	UniRef90	UniRef90_UPI00189900AB	phage head closure protein	NA
UHGV-0176580_10	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0176580_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0176580_10	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0176580_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0176580_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176580_11	PHROG	phrog_5223	neck protein	connector
UHGV-0176580_11	UniRef90	UniRef90_UPI001A9AF385	DNA-packaging protein	NA
UHGV-0176580_11	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-0176580_11	Structural annotation	TIGR01560	NA	NA
UHGV-0176580_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176580_12	UniRef90	UniRef90_UPI001899FA80	phage major capsid protein	NA
UHGV-0176580_12	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0176580_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176580_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176580_12	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176580_13	KOfam	K06904	NA	NA
UHGV-0176580_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0176580_13	UniRef90	UniRef90_UPI00189C5536	HK97 family phage prohead protease	NA
UHGV-0176580_13	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0176580_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0176580_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0176580_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0176580_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0176580_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176580_14	UniRef90	UniRef90_UPI00189AE45D	phage portal protein	NA
UHGV-0176580_14	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-0176580_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176580_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176580_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0176580_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176580_15	UniRef90	UniRef90_UPI00189BE34B	terminase large subunit	NA
UHGV-0176580_15	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0176580_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0176580_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0176580_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176580_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0176580_16	PHROG	phrog_1066	NA	unknown function
UHGV-0176580_16	UniRef90	UniRef90_A0A7G5C3E9	P27 family phage terminase small subunit	NA
UHGV-0176580_16	eggNOG-mapper	290402.Cbei_0905	NA	NA
UHGV-0176580_16	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-0176580_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0176580_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176580_17	UniRef90	UniRef90_R5IDL4	Prophage LambdaBa04 Gp54	NA
UHGV-0176580_17	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0176580_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0176580_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0176580_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176580_18	UniRef90	UniRef90_UPI0018985E32	NA	NA
UHGV-0176580_18	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-0176580_18	Pfam	PF07374	NA	DUF1492
UHGV-0176580_18	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0176580_19	PHROG	phrog_38560	NA	unknown function
UHGV-0176580_19	eggNOG-mapper	610130.Closa_0723	NA	NA
UHGV-0176580_21	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0176580_21	eggNOG-mapper	1449050.JNLE01000003_gene3900	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0176580_21	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0176580_21	Structural annotation	COG1694	NA	NA
UHGV-0176580_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176580_22	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0176580_24	eggNOG-mapper	397291.C804_00917	NA	NA
UHGV-0176580_27	PHROG	phrog_24386	NA	unknown function
UHGV-0176580_27	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0176580_27	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0176580_27	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0176580_29	PHROG	phrog_24368	NA	unknown function
UHGV-0176580_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0176580_31	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0176580_31	UniRef90	UniRef90_UPI001898BB73	DNA cytosine methyltransferase	NA
UHGV-0176580_31	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-0176580_31	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0176580_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0176580_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176580_31	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0176580_32	eggNOG-mapper	1121334.KB911073_gene1845	NA	NA
UHGV-0176580_33	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0176580_36	PHROG	phrog_6996	NA	unknown function
UHGV-0176580_38	Structural annotation	PF13601, NF008565, COG1846	NA	NA
UHGV-0176580_42	UniRef90	UniRef90_UPI000A26F7AD	helix-turn-helix domain-containing protein	NA
UHGV-0176580_42	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0176580_42	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0176580_42	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0176580_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176580_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176580_43	UniRef90	UniRef90_UPI0013565FBF	helix-turn-helix transcriptional regulator	NA
UHGV-0176580_43	eggNOG-mapper	697303.Thewi_2448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176580_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176580_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176580_43	Structural annotation	PF13560, MF_02017, NF041951, COG1396	NA	NA
UHGV-0176580_44	PHROG	phrog_23726	NA	unknown function
UHGV-0176580_44	UniRef90	UniRef90_A0A1M5TXV8	Zinc-ribbon domain-containing protein	NA
UHGV-0176580_44	eggNOG-mapper	428125.CLOLEP_01549	cell wall binding repeat	NA
UHGV-0176580_44	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0176580_45	KOfam	K14059	int; integrase	NA
UHGV-0176580_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0176580_45	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0176580_45	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0176580_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176580_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0176580_45	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA