UHGV-0176586

Genome information

Genome length 34,075 bps

CDS count 65

Completeness 72.06% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176586
vOTU ID	vOTU-022525
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576790
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.96
Jumbo phage	No

Genome content
Genome length	34,075 bps
GC content	29.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.50%
Average CDS length	487.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176586_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-0176586_1	eggNOG-mapper	545697.HMPREF0216_02863	COG NOG18825 non supervised orthologous group	NA
UHGV-0176586_2	PHROG	phrog_36410	NA	unknown function
UHGV-0176586_2	UniRef90	UniRef90_L1Q8H0	Phage tail component protein	NA
UHGV-0176586_2	eggNOG-mapper	545697.HMPREF0216_02862	Phage tail protein	NA
UHGV-0176586_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176586_2	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0176586_3	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0176586_3	UniRef90	UniRef90_UPI001F456E2C	phage tail tape measure protein	NA
UHGV-0176586_3	eggNOG-mapper	536233.CLO_0896	tail tape measure protein	NA
UHGV-0176586_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0176586_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0176586_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0176586_3	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176586_4	PHROG	phrog_17658	NA	unknown function
UHGV-0176586_4	eggNOG-mapper	536233.CLO_0894	NA	NA
UHGV-0176586_4	Structural annotation	PF18116	NA	NA
UHGV-0176586_5	PHROG	phrog_706	NA	unknown function
UHGV-0176586_5	UniRef90	UniRef90_UPI001F1BBF0E	bacteriophage Gp15 family protein	NA
UHGV-0176586_5	eggNOG-mapper	573061.Clocel_0219	Bacteriophage Gp15 protein	NA
UHGV-0176586_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176586_5	Structural annotation	PF06854	NA	NA
UHGV-0176586_6	PHROG	phrog_4450	NA	unknown function
UHGV-0176586_6	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-0176586_6	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0176586_6	Pfam	PF20378	NA	DUF6673
UHGV-0176586_6	Structural annotation	PF20378	NA	NA
UHGV-0176586_7	PHROG	phrog_3099	NA	unknown function
UHGV-0176586_7	eggNOG-mapper	536233.CLO_1572	NA	NA
UHGV-0176586_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0176586_8	PHROG	phrog_3266	tail completion	connector
UHGV-0176586_8	UniRef90	UniRef90_UPI00189B97A4	chloramphenicol resistance protein	NA
UHGV-0176586_8	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-0176586_8	Structural annotation	PF12691	NA	NA
UHGV-0176586_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176586_9	UniRef90	UniRef90_UPI00189788FB	minor capsid protein	NA
UHGV-0176586_9	eggNOG-mapper	545697.HMPREF0216_02853	Minor capsid protein	NA
UHGV-0176586_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176586_9	Structural annotation	PF11114	NA	NA
UHGV-0176586_10	PHROG	phrog_3366	NA	unknown function
UHGV-0176586_10	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0176586_10	Pfam	PF20536	NA	DUF6751
UHGV-0176586_10	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0176586_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176586_11	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0176586_12	PHROG	phrog_1378	NA	unknown function
UHGV-0176586_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176586_13	UniRef90	UniRef90_X5J9Z5	Putative major capsid protein	NA
UHGV-0176586_13	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-0176586_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176586_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176586_14	UniRef90	UniRef90_UPI0006C08B27	phage scaffolding protein	NA
UHGV-0176586_14	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0176586_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176586_14	Structural annotation	PF06810	NA	NA
UHGV-0176586_15	PHROG	phrog_918	NA	unknown function
UHGV-0176586_15	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-0176586_15	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0176586_15	Pfam	PF19791	NA	DUF6275
UHGV-0176586_15	Structural annotation	PF19791	NA	NA
UHGV-0176586_16	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0176586_16	UniRef90	UniRef90_UPI001F3ECC8A	NA	NA
UHGV-0176586_16	eggNOG-mapper	1415774.U728_1667	NA	NA
UHGV-0176586_16	Pfam	PF14359	NA	DUF4406
UHGV-0176586_16	Structural annotation	PF14359	NA	NA
UHGV-0176586_17	PHROG	phrog_1233	NA	unknown function
UHGV-0176586_17	UniRef90	UniRef90_B2TNX0	NA	NA
UHGV-0176586_17	eggNOG-mapper	1280692.AUJL01000004_gene849	NA	NA
UHGV-0176586_17	Structural annotation	PF13058	NA	NA
UHGV-0176586_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176586_19	UniRef90	UniRef90_UPI0018ABD012	minor capsid protein	NA
UHGV-0176586_19	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0176586_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176586_19	COG	COG2369	NA	NA
UHGV-0176586_19	Structural annotation	PF06152	NA	NA
UHGV-0176586_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176586_20	UniRef90	UniRef90_L1Q859	Putative phage minor capsid protein	NA
UHGV-0176586_20	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0176586_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176586_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176586_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0176586_21	UniRef90	UniRef90_L1Q8F3	Phage terminase, large subunit, PBSX family	NA
UHGV-0176586_21	eggNOG-mapper	545697.HMPREF0216_02842	Phage terminase, large subunit, PBSX family	NA
UHGV-0176586_21	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0176586_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0176586_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176586_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176586_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176586_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176586_21	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176586_23	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0176586_23	UniRef90	UniRef90_L1Q856	BRO family protein	NA
UHGV-0176586_23	eggNOG-mapper	545697.HMPREF0216_02840	BRO family, N-terminal domain	NA
UHGV-0176586_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176586_23	COG	COG3617	Prophage antirepressor	NA
UHGV-0176586_24	PHROG	phrog_15827	NA	unknown function
UHGV-0176586_24	UniRef90	UniRef90_R6FRI1	Conserved domain protein	NA
UHGV-0176586_24	eggNOG-mapper	1280689.AUJC01000011_gene1511	DNA-directed 5'-3' RNA polymerase activity	NA
UHGV-0176586_24	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0176586_24	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0176586_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176586_27	UniRef90	UniRef90_A0A174F044	NA	NA
UHGV-0176586_27	eggNOG-mapper	545697.HMPREF0216_02836	NA	NA
UHGV-0176586_27	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0176586_28	PHROG	phrog_1974	NA	unknown function
UHGV-0176586_28	UniRef90	UniRef90_A0A174D6U4	Nucleoid-associated protein	NA
UHGV-0176586_28	eggNOG-mapper	545697.HMPREF0216_02835	37-kD nucleoid-associated bacterial protein	NA
UHGV-0176586_28	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0176586_28	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0176586_28	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0176586_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176586_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176586_30	UniRef90	UniRef90_L1Q7X4	Single-stranded DNA-binding protein	NA
UHGV-0176586_30	eggNOG-mapper	545697.HMPREF0216_02833	Single-stranded DNA-binding protein	NA
UHGV-0176586_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176586_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176586_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176586_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176586_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0176586_35	UniRef90	UniRef90_UPI0006BEDCC8	FeoB-associated Cys-rich membrane protein	NA
UHGV-0176586_37	PHROG	phrog_1672	NA	unknown function
UHGV-0176586_37	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-0176586_37	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-0176586_40	PHROG	phrog_1485	NA	unknown function
UHGV-0176586_40	UniRef90	UniRef90_UPI0018995477	nucleotide modification associated domain-containing protein	NA
UHGV-0176586_40	eggNOG-mapper	545697.HMPREF0216_02824	NA	NA
UHGV-0176586_40	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0176586_41	PHROG	phrog_1389	NA	unknown function
UHGV-0176586_41	eggNOG-mapper	1121091.AUMP01000003_gene2576	NA	NA
UHGV-0176586_41	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0176586_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0176586_44	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176586_44	UniRef90	UniRef90_L1Q8K9	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0176586_44	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0176586_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0176586_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176586_44	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0176586_45	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0176586_45	UniRef90	UniRef90_L1Q7V9	BRO family protein	NA
UHGV-0176586_45	eggNOG-mapper	545697.HMPREF0216_02818	BRO family, N-terminal domain	NA
UHGV-0176586_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176586_45	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0176586_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0176586_46	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0176586_46	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0176586_46	UniRef90	UniRef90_L1Q7W9	Putative transition state transcriptional regulatory protein AbrB	NA
UHGV-0176586_46	eggNOG-mapper	545697.HMPREF0216_02817	toxin-antitoxin pair type II binding	NA
UHGV-0176586_46	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0176586_46	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0176586_46	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0176586_46	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0176586_47	PHROG	phrog_16552	NA	unknown function
UHGV-0176586_49	PHROG	phrog_5164	NA	unknown function
UHGV-0176586_49	UniRef90	UniRef90_L1Q8K4	MazG nucleotide pyrophosphohydrolase domain protein	NA
UHGV-0176586_49	eggNOG-mapper	545697.HMPREF0216_02814	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0176586_49	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0176586_49	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0176586_50	UniRef90	UniRef90_UPI0018AA3912	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA
UHGV-0176586_50	eggNOG-mapper	632245.CLP_1615	NA	NA
UHGV-0176586_50	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0176586_51	PHROG	phrog_2715	NA	unknown function
UHGV-0176586_51	UniRef90	UniRef90_A0A1B8RSY6	NA	NA
UHGV-0176586_51	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0176586_51	Pfam	PF18406	Ferredoxin-like domain in Api92-like protein	DUF1281_C
UHGV-0176586_51	Structural annotation	PF18406	NA	NA
UHGV-0176586_52	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0176586_52	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176586_52	UniRef90	UniRef90_L1Q7Y9	AAA domain-containing protein	NA
UHGV-0176586_52	eggNOG-mapper	545697.HMPREF0216_02810	Bacterial dnaA protein	NA
UHGV-0176586_52	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0176586_52	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0176586_52	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0176586_52	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0176586_53	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0176586_53	UniRef90	UniRef90_UPI0006C0F0B3	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0176586_53	eggNOG-mapper	536233.CLO_1802	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0176586_53	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0176586_53	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0176586_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176586_53	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-0176586_54	PHROG	phrog_10048	NA	unknown function
UHGV-0176586_54	UniRef90	UniRef90_A0A379C7X1	Exodeoxyribonuclease X	NA
UHGV-0176586_54	eggNOG-mapper	536232.CLM_2567	NA	NA
UHGV-0176586_54	Pfam	PF20600	Exodeoxyribonuclease X-like C-terminal	ExoX-like_C
UHGV-0176586_55	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0176586_55	UniRef90	UniRef90_UPI0018A8B836	host-nuclease inhibitor Gam family protein	NA
UHGV-0176586_55	eggNOG-mapper	1415774.U728_1122	Bacteriophage Mu Gam like protein	NA
UHGV-0176586_55	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0176586_55	Structural annotation	PF07352	NA	NA
UHGV-0176586_59	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0176586_59	UniRef90	UniRef90_UPI0018AA0856	histidine kinase	NA
UHGV-0176586_59	eggNOG-mapper	545697.HMPREF0216_02801	NA	NA
UHGV-0176586_59	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0176586_60	PHROG	phrog_18000	NA	unknown function
UHGV-0176586_60	UniRef90	UniRef90_L1Q7Y2	Toxin-antitoxin system, toxin component, Bro family	NA
UHGV-0176586_60	eggNOG-mapper	545697.HMPREF0216_02800	AntA/AntB antirepressor	NA
UHGV-0176586_60	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176586_60	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0176586_60	Structural annotation	PF02498, PF10552, COG3617	NA	NA
UHGV-0176586_61	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0176586_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176586_61	UniRef90	UniRef90_UPI00189958C0	helix-turn-helix transcriptional regulator	NA
UHGV-0176586_61	eggNOG-mapper	411902.CLOBOL_05712	sequence-specific DNA binding	NA
UHGV-0176586_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176586_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176586_61	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0176586_62	UniRef90	UniRef90_L1Q7U1	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0176586_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176586_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0176586_63	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0176586_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176586_63	UniRef90	UniRef90_UPI00189A2239	helix-turn-helix domain-containing protein	NA
UHGV-0176586_63	eggNOG-mapper	545697.HMPREF0216_02797	sequence-specific DNA binding	NA
UHGV-0176586_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176586_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176586_63	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0176586_65	KOfam	K14059	int; integrase	NA
UHGV-0176586_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0176586_65	UniRef90	UniRef90_L1Q8T4	Site-specific recombinase, phage integrase family	NA
UHGV-0176586_65	eggNOG-mapper	545697.HMPREF0216_02796	Belongs to the 'phage' integrase family	NA
UHGV-0176586_65	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0176586_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176586_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176586_65	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA