UHGV-0176590

Genome information

Genome length 18,295 bps

CDS count 28

Completeness 53.61% (medium-quality)

geNomad score 0.9397

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176590
vOTU ID	vOTU-028908
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588352
BioSample	SAMN09781699
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9397
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.65
Jumbo phage	No

Genome content
Genome length	18,295 bps
GC content	43.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	86.41%
Average CDS length	569.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176590_1	UniRef90	UniRef90_A0A358WDT4	DNA alkylation repair protein	NA
UHGV-0176590_1	eggNOG-mapper	1069080.KB913028_gene1344	DNA alkylation repair enzyme	NA
UHGV-0176590_1	Pfam	PF08713	DNA alkylation repair enzyme	DNA_alkylation
UHGV-0176590_1	COG	COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	NA
UHGV-0176590_1	Structural annotation	PF08713, COG4912	NA	NA
UHGV-0176590_2	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0176590_2	UniRef90	UniRef90_A0A174ZSI5	Phage minor capsid protein 2	NA
UHGV-0176590_2	eggNOG-mapper	86416.Clopa_3380	Phage minor capsid protein 2	NA
UHGV-0176590_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176590_2	COG	COG2369	NA	NA
UHGV-0176590_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0176590_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0176590_3	UniRef90	UniRef90_A0A6N4APD4	HTH cro/C1-type domain-containing protein	NA
UHGV-0176590_3	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0176590_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176590_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0176590_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0176590_3	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0176590_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0176590_4	UniRef90	UniRef90_UPI000F52F993	BRO family protein	NA
UHGV-0176590_4	eggNOG-mapper	445972.ANACOL_00517	BRO family, N-terminal domain	NA
UHGV-0176590_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176590_4	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0176590_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0176590_4	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0176590_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0176590_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176590_5	UniRef90	UniRef90_A0A174ZWN9	Transcriptional regulator, y4mF family	NA
UHGV-0176590_5	eggNOG-mapper	1235792.C808_01473	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176590_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176590_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176590_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0176590_9	PHROG	phrog_310	transposase	integration and excision
UHGV-0176590_9	UniRef90	UniRef90_A0A174ZTH8	Integrase core domain	NA
UHGV-0176590_9	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0176590_9	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0176590_9	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0176590_9	Pfam	PF00665	Integrase core domain	rve
UHGV-0176590_9	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0176590_9	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0176590_9	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0176590_10	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0176590_10	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0176590_10	UniRef90	UniRef90_A0A175A3H1	AAA domain-containing protein	NA
UHGV-0176590_10	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0176590_10	Pfam	PF13401	AAA domain	AAA_22
UHGV-0176590_10	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0176590_10	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0176590_13	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0176590_13	UniRef90	UniRef90_A0A017RV38	SpoVT-AbrB domain-containing protein	NA
UHGV-0176590_13	eggNOG-mapper	645991.Sgly_0173	Transcriptional regulator, AbrB family	NA
UHGV-0176590_13	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0176590_13	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0176590_14	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0176590_14	AcrCatalog	cluster_71843	NA	NA
UHGV-0176590_15	UniRef90	UniRef90_A0A552V719	NA	NA
UHGV-0176590_15	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-0176590_15	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0176590_15	Structural annotation	PF06252	NA	NA
UHGV-0176590_16	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-0176590_16	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0176590_16	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0176590_17	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0176590_17	UniRef90	UniRef90_A0A1M6MWL2	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176590_17	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176590_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176590_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0176590_19	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0176590_20	PHROG	phrog_25462	NA	unknown function
UHGV-0176590_20	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0176590_20	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-0176590_20	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0176590_21	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0176590_21	UniRef90	UniRef90_R5GR06	PF11985 family protein	NA
UHGV-0176590_21	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0176590_21	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0176590_21	Structural annotation	PF11985	NA	NA
UHGV-0176590_22	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0176590_22	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0176590_22	UniRef90	UniRef90_A0A174ZTH1	Transcription termination factor nusG	NA
UHGV-0176590_22	eggNOG-mapper	906968.Trebr_1757	Transcription antitermination protein, NusG	NA
UHGV-0176590_22	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0176590_22	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0176590_22	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0176590_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0176590_23	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-0176590_23	Structural annotation	PF07141	NA	NA
UHGV-0176590_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176590_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0176590_24	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-0176590_24	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0176590_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176590_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176590_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176590_24	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176590_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176590_25	UniRef90	UniRef90_A0A174ZTD4	Phage portal protein, putative, A118 family	NA
UHGV-0176590_25	eggNOG-mapper	1134413.ANNK01000120_gene2031	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176590_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176590_25	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0176590_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176590_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176590_26	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0176590_26	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0176590_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176590_26	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0176590_26	COG	COG2369	NA	NA
UHGV-0176590_26	Structural annotation	PF06152	NA	NA
UHGV-0176590_27	Structural annotation	PF11607, MF_01077, NF037951, COG4568	NA	NA