UHGV-0176609

Genome information

Genome length 38,897 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176609
vOTU ID	vOTU-046588
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589769
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.03
Jumbo phage	No

Genome content
Genome length	38,897 bps
GC content	47.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.50%
Average CDS length	641.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176609_1	PHROG	phrog_3266	tail completion	connector
UHGV-0176609_1	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0176609_2	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176609_2	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0176609_2	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0176609_3	PHROG	phrog_3366	NA	unknown function
UHGV-0176609_3	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0176609_3	Pfam	PF20536	NA	DUF6751
UHGV-0176609_3	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0176609_4	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176609_4	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0176609_5	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176609_5	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0176609_5	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-0176609_6	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176609_6	UniRef90	UniRef90_K1ST28	Phage minor structural protein (Fragment)	NA
UHGV-0176609_6	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0176609_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176609_6	Structural annotation	PF06810	NA	NA
UHGV-0176609_7	PHROG	phrog_13199	NA	unknown function
UHGV-0176609_7	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0176609_8	PHROG	phrog_1048	NA	unknown function
UHGV-0176609_8	UniRef90	UniRef90_A0A2V2D8W4	NA	NA
UHGV-0176609_8	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0176609_8	Pfam	PF11195	NA	DUF2829
UHGV-0176609_8	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0176609_8	Structural annotation	PF11195	NA	NA
UHGV-0176609_9	PHROG	phrog_21498	NA	unknown function
UHGV-0176609_9	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0176609_9	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176609_9	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0176609_10	PHROG	phrog_34731	NA	unknown function
UHGV-0176609_10	eggNOG-mapper	1400520.LFAB_08810	NA	NA
UHGV-0176609_10	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-0176609_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176609_11	UniRef90	UniRef90_UPI001917634A	minor capsid protein	NA
UHGV-0176609_11	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0176609_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176609_11	Pfam	PF21814	NA	DUF6883
UHGV-0176609_11	COG	COG2369	NA	NA
UHGV-0176609_11	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0176609_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176609_12	UniRef90	UniRef90_UPI00156ECCAD	phage capsid protein	NA
UHGV-0176609_12	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0176609_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176609_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176609_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0176609_13	UniRef90	UniRef90_UPI00156FDA8C	terminase family protein	NA
UHGV-0176609_13	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0176609_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176609_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176609_13	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176609_14	PHROG	phrog_2412	NA	unknown function
UHGV-0176609_14	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0176609_14	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0176609_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176609_15	UniRef90	UniRef90_UPI001571211B	NA	NA
UHGV-0176609_15	eggNOG-mapper	97139.C824_05976	sigma factor activity	NA
UHGV-0176609_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0176609_15	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0176609_16	PHROG	phrog_6568	NA	unknown function
UHGV-0176609_19	PHROG	phrog_15077	NA	unknown function
UHGV-0176609_19	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0176609_20	PHROG	phrog_98	NA	unknown function
UHGV-0176609_20	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-0176609_20	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-0176609_20	Pfam	PF09643	YopX protein	YopX
UHGV-0176609_20	Pfam	PF04448	NA	DUF551
UHGV-0176609_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0176609_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176609_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176609_23	UniRef90	UniRef90_A0A1C5WD91	Single-stranded DNA-binding protein	NA
UHGV-0176609_23	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-0176609_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176609_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176609_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176609_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176609_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0176609_26	PHROG	phrog_2776	NA	unknown function
UHGV-0176609_26	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0176609_26	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0176609_27	eggNOG-mapper	1234679.BN424_1881	NA	NA
UHGV-0176609_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0176609_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0176609_28	UniRef90	UniRef90_UPI001C029164	DNA cytosine methyltransferase	NA
UHGV-0176609_28	eggNOG-mapper	742741.HMPREF9475_00411	C-5 cytosine-specific DNA methylase	NA
UHGV-0176609_28	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0176609_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0176609_28	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0176609_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176609_28	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0176609_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176609_29	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0176609_29	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-0176609_29	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0176609_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176609_29	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0176609_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0176609_29	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0176609_30	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176609_30	UniRef90	UniRef90_UPI0015704587	NA	NA
UHGV-0176609_30	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0176609_30	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0176609_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176609_30	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0176609_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176609_31	UniRef90	UniRef90_UPI001F2D4613	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176609_31	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0176609_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0176609_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176609_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0176609_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176609_32	UniRef90	UniRef90_UPI001C026F6F	recombinase RecT	NA
UHGV-0176609_32	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0176609_32	Pfam	PF03837	RecT family	RecT
UHGV-0176609_32	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0176609_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0176609_32	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0176609_33	PHROG	phrog_674	NA	unknown function
UHGV-0176609_33	UniRef90	UniRef90_UPI001C0153C8	NA	NA
UHGV-0176609_33	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0176609_33	Pfam	PF07083	NA	DUF1351
UHGV-0176609_33	Structural annotation	PF07083	NA	NA
UHGV-0176609_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176609_34	UniRef90	UniRef90_UPI001C0120DF	YqaJ viral recombinase family protein	NA
UHGV-0176609_34	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0176609_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0176609_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0176609_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0176609_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0176609_39	PHROG	phrog_6058	NA	unknown function
UHGV-0176609_39	UniRef90	UniRef90_A0A1C5QR48	Helix-turn-helix	NA
UHGV-0176609_39	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0176609_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176609_39	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0176609_41	UniRef90	UniRef90_UPI00156EFEB1	helix-turn-helix domain-containing protein	NA
UHGV-0176609_41	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0176609_41	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0176609_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0176609_42	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0176609_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176609_42	UniRef90	UniRef90_A0A1C5QQD0	Transcriptional regulator, y4mF family	NA
UHGV-0176609_42	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0176609_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176609_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176609_42	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176609_43	PHROG	phrog_87	metallo-protease	other
UHGV-0176609_43	UniRef90	UniRef90_UPI0015D3F2DD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0176609_43	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0176609_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0176609_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0176609_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0176609_44	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0176609_44	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-0176609_44	Structural annotation	PF06152	NA	NA
UHGV-0176609_45	PHROG	phrog_15412	NA	unknown function
UHGV-0176609_45	UniRef90	UniRef90_UPI00156E50E6	heavy metal-binding domain-containing protein	NA
UHGV-0176609_45	eggNOG-mapper	537013.CLOSTMETH_03242	Putative heavy-metal-binding	NA
UHGV-0176609_45	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0176609_45	COG	COG0393	NA	NA
UHGV-0176609_46	KOfam	K14059	int; integrase	NA
UHGV-0176609_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0176609_46	UniRef90	UniRef90_A0A1C5QPZ2	Integrase	NA
UHGV-0176609_46	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0176609_46	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0176609_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0176609_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176609_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176609_46	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0176609_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0176609_47	PHROG	phrog_1794	amidase	lysis
UHGV-0176609_47	UniRef90	UniRef90_A0A1C6J4E5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176609_47	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0176609_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0176609_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176609_47	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0176609_48	PHROG	phrog_199	holin	lysis
UHGV-0176609_48	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0176609_48	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0176609_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0176609_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0176609_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0176609_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0176609_50	UniRef90	UniRef90_B6WRR9	Phage Tail Collar Domain protein (Fragment)	NA
UHGV-0176609_50	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-0176609_50	COG	COG4675	Phage tail collar domain	NA
UHGV-0176609_51	PHROG	phrog_38190	NA	unknown function
UHGV-0176609_51	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-0176609_51	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0176609_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0176609_52	PHROG	phrog_3558	tail protein	tail
UHGV-0176609_52	UniRef90	UniRef90_A0A1C5QW63	Phage minor structural protein, N-terminal region	NA
UHGV-0176609_52	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0176609_52	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176609_52	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0176609_52	COG	COG4926	Phage-related protein	NA
UHGV-0176609_52	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0176609_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176609_53	UniRef90	UniRef90_A0A1C5QVY7	Phage-related protein	NA
UHGV-0176609_53	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0176609_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176609_53	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0176609_54	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0176609_54	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0176609_54	UniRef90	UniRef90_A0A1C5QW36	Phage-related protein	NA
UHGV-0176609_54	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0176609_54	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0176609_54	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0176609_54	COG	COG5283	Phage-related tail protein	NA
UHGV-0176609_54	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-0176609_55	PHROG	phrog_706	NA	unknown function
UHGV-0176609_55	UniRef90	UniRef90_A0A1C5QVP1	Bacteriophage Gp15 protein	NA
UHGV-0176609_55	eggNOG-mapper	1235792.C808_05375	COG NOG24969 non supervised orthologous group	NA
UHGV-0176609_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176609_55	Structural annotation	PF06854	NA	NA
UHGV-0176609_56	PHROG	phrog_3099	NA	unknown function
UHGV-0176609_56	eggNOG-mapper	1235792.C808_05373	NA	NA
UHGV-0176609_56	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0176609_57	eggNOG-mapper	1235792.C808_05372	NA	NA