UHGV-0176619

Genome information

Genome length 20,506 bps

CDS count 29

Completeness 57.69% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176619
vOTU ID	vOTU-028910
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589750
BioSample	SAMN09781684
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.84
Jumbo phage	No

Genome content
Genome length	20,506 bps
GC content	37.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	93.57%
Average CDS length	664.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176619_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0176619_1	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0176619_1	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0176619_1	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0176619_1	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0176619_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0176619_1	COG	COG0863	DNA modification methylase	NA
UHGV-0176619_1	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0176619_2	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176619_2	UniRef90	UniRef90_A0A3D4CBP5	NA	NA
UHGV-0176619_2	eggNOG-mapper	2754.EH55_06950	NA	NA
UHGV-0176619_2	Pfam	PF12961	NA	DUF3850
UHGV-0176619_3	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0176619_5	PHROG	phrog_14682	NA	unknown function
UHGV-0176619_5	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0176619_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176619_8	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0176619_8	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0176619_8	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0176619_8	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0176619_10	UniRef90	UniRef90_R5XKI0	DNA-binding helix-turn-helix protein	NA
UHGV-0176619_10	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0176619_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176619_10	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0176619_12	PHROG	phrog_2412	NA	unknown function
UHGV-0176619_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176619_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0176619_13	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0176619_13	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0176619_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0176619_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176619_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176619_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176619_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176619_14	UniRef90	UniRef90_R6DKE2	Phage minor capsid protein	NA
UHGV-0176619_14	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0176619_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176619_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176619_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176619_15	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0176619_15	eggNOG-mapper	1539298.JO41_12785	Phage minor capsid protein 2	NA
UHGV-0176619_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176619_15	COG	COG2369	NA	NA
UHGV-0176619_15	Structural annotation	PF06152	NA	NA
UHGV-0176619_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176619_17	UniRef90	UniRef90_R6DN20	Phage minor structural protein GP20	NA
UHGV-0176619_17	eggNOG-mapper	1462526.BN990_03874	Phage minor structural protein GP20	NA
UHGV-0176619_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176619_17	Structural annotation	PF06810	NA	NA
UHGV-0176619_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176619_18	UniRef90	UniRef90_A0A2C5VZS4	N4-gp56 family major capsid protein	NA
UHGV-0176619_18	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0176619_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176619_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176619_19	eggNOG-mapper	903814.ELI_3207	NA	NA
UHGV-0176619_20	PHROG	phrog_3366	NA	unknown function
UHGV-0176619_20	Pfam	PF20536	NA	DUF6751
UHGV-0176619_20	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0176619_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176619_21	UniRef90	UniRef90_UPI001F06267A	minor capsid protein	NA
UHGV-0176619_21	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0176619_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176619_21	Structural annotation	PF11114	NA	NA
UHGV-0176619_22	PHROG	phrog_3266	tail completion	connector
UHGV-0176619_22	UniRef90	UniRef90_UPI0018994F5C	chloramphenicol resistance protein	NA
UHGV-0176619_22	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0176619_22	Structural annotation	PF12691	NA	NA
UHGV-0176619_23	PHROG	phrog_3099	NA	unknown function
UHGV-0176619_23	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0176619_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0176619_24	Structural annotation	PF10666	NA	NA
UHGV-0176619_25	PHROG	phrog_706	NA	unknown function
UHGV-0176619_25	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0176619_25	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0176619_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176619_25	Structural annotation	PF06854	NA	NA
UHGV-0176619_26	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0176619_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176619_26	eggNOG-mapper	469596.HMPREF9488_01328	tape measure	NA
UHGV-0176619_26	COG	COG5412	Phage-related protein	NA
UHGV-0176619_27	PHROG	phrog_1194	NA	unknown function