UHGV-0176621

Genome information

Genome length 58,191 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176621
vOTU ID	vOTU-010959
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581603
BioSample	SAMN09781694
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.01
Jumbo phage	No

Genome content
Genome length	58,191 bps
GC content	49.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	90.33%
Average CDS length	704.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176621_2	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0176621_2	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0176621_2	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0176621_2	Structural annotation	PF05772	NA	NA
UHGV-0176621_3	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0176621_3	UniRef90	UniRef90_UPI001E2B9DFF	host-nuclease inhibitor Gam family protein	NA
UHGV-0176621_3	eggNOG-mapper	1519439.JPJG01000051_gene723	Bacteriophage Mu Gam like protein	NA
UHGV-0176621_3	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0176621_3	Structural annotation	PF07352	NA	NA
UHGV-0176621_4	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176621_4	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0176621_4	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0176621_4	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0176621_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176621_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176621_10	UniRef90	UniRef90_R6HTL1	DNA-binding helix-turn-helix protein	NA
UHGV-0176621_10	eggNOG-mapper	397290.C810_05152	DNA-binding helix-turn-helix protein	NA
UHGV-0176621_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176621_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176621_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176621_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176621_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176621_11	UniRef90	UniRef90_UPI0015DE4146	helix-turn-helix domain-containing protein	NA
UHGV-0176621_11	eggNOG-mapper	416870.llmg_0008	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176621_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176621_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176621_12	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0176621_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176621_12	UniRef90	UniRef90_A0A1I3CXA4	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176621_12	eggNOG-mapper	411460.RUMTOR_01319	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176621_12	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0176621_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176621_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176621_12	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0176621_14	PHROG	phrog_3292	NA	unknown function
UHGV-0176621_14	UniRef90	UniRef90_A0A6P1DME3	KTSC domain-containing protein	NA
UHGV-0176621_14	eggNOG-mapper	1117319.PSPO_09654	KTSC domain	NA
UHGV-0176621_14	Pfam	PF13619	KTSC domain	KTSC
UHGV-0176621_14	COG	COG1190	Lysyl-tRNA synthetase (class II)	NA
UHGV-0176621_14	Structural annotation	PF13619	NA	NA
UHGV-0176621_15	PHROG	phrog_10678	NA	unknown function
UHGV-0176621_16	Structural annotation	NF040976	NA	NA
UHGV-0176621_18	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0176621_18	UniRef90	UniRef90_UPI001D02F64C	DNA-packaging protein	NA
UHGV-0176621_18	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0176621_18	Structural annotation	PF16677	NA	NA
UHGV-0176621_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176621_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176621_19	UniRef90	UniRef90_UPI001C30E6F9	PBSX family phage terminase large subunit	NA
UHGV-0176621_19	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-0176621_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176621_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176621_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176621_19	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176621_22	PHROG	phrog_156	portal protein	head and packaging
UHGV-0176621_22	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0176621_22	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0176621_24	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0176621_24	UniRef90	UniRef90_A0A3D2CI53	Phage major capsid protein	NA
UHGV-0176621_24	eggNOG-mapper	935948.KE386495_gene2267	NA	NA
UHGV-0176621_24	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0176621_24	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0176621_26	Structural annotation	PF20387	NA	NA
UHGV-0176621_27	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0176621_27	Structural annotation	PF11134, NF038128, COG5276	NA	NA
UHGV-0176621_30	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0176621_30	COG	COG4926	Phage-related protein	NA
UHGV-0176621_30	Structural annotation	PF10651	NA	NA
UHGV-0176621_31	PHROG	phrog_13589	NA	unknown function
UHGV-0176621_31	eggNOG-mapper	1298920.KI911353_gene4836	ATPase involved in DNA repair	NA
UHGV-0176621_31	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0176621_32	eggNOG-mapper	931626.Awo_c11420	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0176621_32	Pfam	PF19789	NA	DUF6273
UHGV-0176621_32	COG	COG3209	NA	NA
UHGV-0176621_32	Structural annotation	PF19789	NA	NA
UHGV-0176621_33	PHROG	phrog_19111	NA	unknown function
UHGV-0176621_33	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0176621_33	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0176621_34	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0176621_34	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0176621_36	PHROG	phrog_4105	NA	unknown function
UHGV-0176621_36	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0176621_37	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0176621_37	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0176621_37	UniRef90	UniRef90_A0A168DE04	Peptidase_M23 domain-containing protein	NA
UHGV-0176621_37	eggNOG-mapper	1449126.JQKL01000043_gene1877	Peptidase family M23	NA
UHGV-0176621_37	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0176621_37	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0176621_37	Structural annotation	PF01551, PF09992, NF040883, COG0739, COG3698	NA	NA
UHGV-0176621_39	eggNOG-mapper	693746.OBV_19020	NA	NA
UHGV-0176621_40	PHROG	phrog_3754	NA	unknown function
UHGV-0176621_40	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0176621_41	PHROG	phrog_21718	NA	unknown function
UHGV-0176621_41	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176621_42	PHROG	phrog_22984	NA	unknown function
UHGV-0176621_43	PHROG	phrog_16490	NA	unknown function
UHGV-0176621_43	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0176621_44	PHROG	phrog_20016	NA	unknown function
UHGV-0176621_44	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0176621_44	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0176621_44	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176621_45	Structural annotation	PF12510	NA	NA
UHGV-0176621_47	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0176621_47	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0176621_47	UniRef90	UniRef90_A0A1I4I5E9	Resolvase, N terminal domain	NA
UHGV-0176621_47	eggNOG-mapper	1408312.JNJS01000002_gene68	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0176621_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0176621_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0176621_47	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0176621_48	PHROG	phrog_2172	NA	unknown function
UHGV-0176621_48	UniRef90	UniRef90_W1I4H7	Uncultured bacterium plasmid pRGI00071	NA
UHGV-0176621_48	eggNOG-mapper	1408311.JNJM01000024_gene619	Initiator Replication protein	NA
UHGV-0176621_48	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0176621_48	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0176621_48	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0176621_48	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0176621_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0176621_52	PHROG	phrog_14770	NA	unknown function
UHGV-0176621_52	UniRef90	UniRef90_UPI001BB47D0E	strawberry notch family protein	NA
UHGV-0176621_52	eggNOG-mapper	1123288.SOV_4c02780	protein secretion by the type IV secretion system	NA
UHGV-0176621_52	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0176621_52	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0176621_52	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0176621_52	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0176621_52	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0176621_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176621_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176621_54	UniRef90	UniRef90_R5QD10	Single-stranded DNA-binding protein	NA
UHGV-0176621_54	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-0176621_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176621_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176621_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176621_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176621_54	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0176621_55	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0176621_55	eggNOG-mapper	1415774.U728_1667	NA	NA
UHGV-0176621_55	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0176621_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0176621_56	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176621_56	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176621_56	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0176621_56	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0176621_57	PHROG	phrog_474	phosphofructokinase	other
UHGV-0176621_57	UniRef90	UniRef90_UPI00103054B4	NA	NA
UHGV-0176621_57	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0176621_57	Pfam	PF19905	NA	DUF6378
UHGV-0176621_57	Structural annotation	PF19905	NA	NA
UHGV-0176621_59	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0176621_59	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0176621_59	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0176621_59	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0176621_59	Pfam	PF00692	dUTPase	dUTPase
UHGV-0176621_59	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0176621_59	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0176621_59	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0176621_60	eggNOG-mapper	398512.JQKC01000047_gene4764	NA	NA
UHGV-0176621_60	COG	COG3600	NA	NA
UHGV-0176621_62	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0176621_62	Pfam	PF04448	NA	DUF551
UHGV-0176621_62	Structural annotation	NF041588	NA	NA
UHGV-0176621_63	Pfam	PF04448	NA	DUF551
UHGV-0176621_65	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0176621_65	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0176621_65	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0176621_65	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0176621_65	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0176621_65	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0176621_65	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0176621_65	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176621_68	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0176621_68	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0176621_74	PHROG	phrog_9804	NA	unknown function
UHGV-0176621_74	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-0176621_74	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0176621_74	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0176621_74	Structural annotation	PF11417	NA	NA
UHGV-0176621_75	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176621_75	UniRef90	UniRef90_UPI000FFE23B4	helix-turn-helix domain-containing protein	NA
UHGV-0176621_75	eggNOG-mapper	945021.TEH_18370	Helix-turn-helix domain	NA
UHGV-0176621_75	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA