UHGV-0176656

Genome information

Genome length 36,412 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176656
vOTU ID	vOTU-004897
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590298
BioSample	SAMN09781697
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.42
Jumbo phage	No

Genome content
Genome length	36,412 bps
GC content	47.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.76%
Average CDS length	646.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176656_1	PHROG	phrog_20532	NA	unknown function
UHGV-0176656_1	eggNOG-mapper	1280692.AUJL01000012_gene3222	NA	NA
UHGV-0176656_1	Structural annotation	PF00132	NA	NA
UHGV-0176656_2	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0176656_2	UniRef90	UniRef90_UPI00051BDF29	siphovirus Gp157 family protein	NA
UHGV-0176656_2	eggNOG-mapper	1449050.JNLE01000005_gene3949	Siphovirus Gp157	NA
UHGV-0176656_2	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0176656_2	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0176656_3	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176656_3	UniRef90	UniRef90_R9KLP4	Phage recombination protein Bet	NA
UHGV-0176656_3	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0176656_3	Pfam	PF03837	RecT family	RecT
UHGV-0176656_3	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0176656_3	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0176656_3	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0176656_4	PHROG	phrog_15768	NA	unknown function
UHGV-0176656_4	UniRef90	UniRef90_R6RVQ1	Chromosome segregation ATPases	NA
UHGV-0176656_4	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0176656_4	AcrCatalog	cluster_14472	NA	NA
UHGV-0176656_4	Pfam	PF19808	NA	DUF6291
UHGV-0176656_4	Structural annotation	PF19808	NA	NA
UHGV-0176656_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176656_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176656_6	UniRef90	UniRef90_A0A1W1VQW5	Single-stranded DNA-binding protein	NA
UHGV-0176656_6	eggNOG-mapper	1449126.JQKL01000046_gene2063	Single-strand binding protein family	NA
UHGV-0176656_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176656_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176656_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176656_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176656_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0176656_7	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0176656_7	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176656_7	UniRef90	UniRef90_UPI001CC048CF	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176656_7	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0176656_7	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0176656_7	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176656_7	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0176656_8	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0176656_10	PHROG	phrog_25385	NA	unknown function
UHGV-0176656_10	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-0176656_10	Structural annotation	PF04012	NA	NA
UHGV-0176656_12	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0176656_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0176656_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176656_18	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0176656_18	eggNOG-mapper	1121871.AUAT01000030_gene1019	NA	NA
UHGV-0176656_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0176656_18	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0176656_19	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0176656_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176656_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0176656_20	UniRef90	UniRef90_A0A2V2EQG3	Terminase_3 domain-containing protein	NA
UHGV-0176656_20	eggNOG-mapper	665956.HMPREF1032_03884	Terminase-like family	NA
UHGV-0176656_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176656_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176656_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176656_21	KOfam	K01371	CTSK; cathepsin K [EC:3.4.22.38]	NA
UHGV-0176656_21	PHROG	phrog_16701	peptidase	other
UHGV-0176656_21	UniRef90	UniRef90_A0A352NP54	Pept_C1 domain-containing protein	NA
UHGV-0176656_21	eggNOG-mapper	1121423.JONT01000003_gene1013	NA	NA
UHGV-0176656_21	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-0176656_21	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0176656_21	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0176656_21	Structural annotation	PF00112, PF07833, COG4870	NA	NA
UHGV-0176656_22	PHROG	phrog_1863	NA	unknown function
UHGV-0176656_22	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0176656_23	PHROG	phrog_297	holin	lysis
UHGV-0176656_23	UniRef90	UniRef90_UPI0018971F5F	phage holin	NA
UHGV-0176656_23	eggNOG-mapper	97138.C820_02010	Bacteriophage holin	NA
UHGV-0176656_23	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0176656_23	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0176656_23	COG	COG5546	NA	NA
UHGV-0176656_23	Structural annotation	COG5546	NA	NA
UHGV-0176656_25	PHROG	phrog_156	portal protein	head and packaging
UHGV-0176656_25	eggNOG-mapper	1408437.JNJN01000002_gene1395	NA	NA
UHGV-0176656_25	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176656_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176656_27	UniRef90	UniRef90_A0A0M2NHR5	Phage major capsid protein	NA
UHGV-0176656_27	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0176656_27	Pfam	PF13287	Fn3 associated	Fn3_assoc
UHGV-0176656_27	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176656_28	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-0176656_28	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0176656_29	Structural annotation	PF11650	NA	NA
UHGV-0176656_30	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0176656_30	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0176656_30	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0176656_32	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0176656_32	PHROG	phrog_819	tail protein	tail
UHGV-0176656_32	UniRef90	UniRef90_UPI001F4CFECE	collagen-like protein	NA
UHGV-0176656_32	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0176656_32	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0176656_32	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0176656_35	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0176656_35	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0176656_35	UniRef90	UniRef90_A0A2V2EQ01	Peptidase_M23 domain-containing protein	NA
UHGV-0176656_35	eggNOG-mapper	67267.JNXT01000027_gene1316	Peptidase family M23	NA
UHGV-0176656_35	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0176656_35	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0176656_35	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-0176656_36	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0176656_38	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176656_41	KOfam	K14059	int; integrase	NA
UHGV-0176656_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0176656_41	UniRef90	UniRef90_UPI0019610FE2	site-specific integrase	NA
UHGV-0176656_41	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0176656_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176656_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176656_41	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0176656_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176656_44	UniRef90	UniRef90_A0A4S2H5B3	XRE family transcriptional regulator	NA
UHGV-0176656_44	eggNOG-mapper	1226322.HMPREF1545_00085	sequence-specific DNA binding	NA
UHGV-0176656_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176656_44	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0176656_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0176656_45	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0176656_45	UniRef90	UniRef90_A0A4S2A9B1	XRE family transcriptional regulator	NA
UHGV-0176656_45	eggNOG-mapper	97138.C820_00785	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176656_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0176656_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176656_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0176656_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176656_47	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0176656_47	PHROG	phrog_938	endolysin	lysis
UHGV-0176656_47	UniRef90	UniRef90_R6DPB3	Putative Cell wall hydrolase	NA
UHGV-0176656_47	eggNOG-mapper	1274524.BSONL12_12176	COG3773 Cell wall hydrolyses involved in spore germination	NA
UHGV-0176656_47	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0176656_47	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0176656_47	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0176656_52	PHROG	phrog_5070	NA	unknown function
UHGV-0176656_52	UniRef90	UniRef90_A0A373IMM1	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0176656_52	eggNOG-mapper	1094560.ME9_01001	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0176656_52	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA