UHGV-0176677

Genome information

Genome length 33,447 bps

CDS count 60

Completeness 75.13% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176677
vOTU ID	vOTU-028913
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583511
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.98
Jumbo phage	No

Genome content
Genome length	33,447 bps
GC content	53.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.81%
Average CDS length	510.10 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176677_2	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0176677_2	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0176677_3	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0176677_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0176677_7	PHROG	phrog_32308	NA	unknown function
UHGV-0176677_7	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0176677_7	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0176677_8	PHROG	phrog_1194	NA	unknown function
UHGV-0176677_8	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0176677_8	Pfam	PF20458	NA	DUF6711
UHGV-0176677_8	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0176677_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176677_9	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0176677_9	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0176677_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0176677_10	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0176677_11	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0176677_12	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0176677_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0176677_13	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0176677_14	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0176677_15	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0176677_16	UniRef90	UniRef90_A0A1V5X694	Phage gp6-like head-tail connector protein	NA
UHGV-0176677_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0176677_16	Structural annotation	TIGR01560	NA	NA
UHGV-0176677_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176677_17	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0176677_17	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176677_20	PHROG	phrog_6577	NA	unknown function
UHGV-0176677_20	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0176677_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176677_20	COG	COG2369	NA	NA
UHGV-0176677_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176677_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176677_21	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0176677_21	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176677_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176677_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176677_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0176677_23	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0176677_23	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0176677_23	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0176677_23	COG	COG5410	NA	NA
UHGV-0176677_23	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0176677_24	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-0176677_24	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0176677_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0176677_25	PHROG	phrog_33872	NA	unknown function
UHGV-0176677_26	Structural annotation	PF10723	NA	NA
UHGV-0176677_28	eggNOG-mapper	1232436.CAPF01000086_gene855	NA	NA
UHGV-0176677_30	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0176677_30	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0176677_30	UniRef90	UniRef90_A0A3D3Y6X7	FtsK domain-containing protein	NA
UHGV-0176677_30	eggNOG-mapper	1121445.ATUZ01000013_gene1292	PFAM cell divisionFtsK SpoIIIE	NA
UHGV-0176677_30	PADLOC	SspH_00004	SspH	SSP
UHGV-0176677_30	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0176677_30	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0176677_30	Structural annotation	PF01580, MF_00350, TIGR03925, COG4128	NA	NA
UHGV-0176677_31	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176677_31	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0176677_31	UniRef90	UniRef90_UPI0006824F34	phage antirepressor KilAC domain-containing protein	NA
UHGV-0176677_31	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0176677_31	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0176677_31	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176677_31	COG	COG3617	Prophage antirepressor	NA
UHGV-0176677_31	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0176677_33	UniRef90	UniRef90_A0A810QAS6	RHH_5 domain-containing protein	NA
UHGV-0176677_33	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0176677_33	Structural annotation	PF16777, NF041793, COG4877	NA	NA
UHGV-0176677_35	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176677_35	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0176677_35	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0176677_36	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0176677_37	UniRef90	UniRef90_K1SN71	HTH_30 domain-containing protein	NA
UHGV-0176677_37	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0176677_38	Structural annotation	PF10013	NA	NA
UHGV-0176677_39	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0176677_39	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0176677_39	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0176677_39	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0176677_42	PHROG	phrog_32758	DNA methyltransferase	other
UHGV-0176677_42	UniRef90	UniRef90_A0A139TUG1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0176677_42	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0176677_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176677_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0176677_43	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0176677_43	UniRef90	UniRef90_UPI00082E0CBC	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0176677_43	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0176677_43	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0176677_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0176677_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176677_43	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0176677_46	Structural annotation	PF05082	NA	NA
UHGV-0176677_47	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0176677_48	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0176677_48	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0176677_51	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0176677_51	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0176677_53	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176677_53	UniRef90	UniRef90_R6LWZ9	DnaD and phage-associated domain	NA
UHGV-0176677_53	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0176677_53	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0176677_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176677_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176677_54	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0176677_54	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0176677_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176677_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176677_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176677_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176677_54	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0176677_55	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0176677_55	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0176677_55	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0176677_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0176677_56	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0176677_56	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0176677_56	Structural annotation	PF05772	NA	NA
UHGV-0176677_57	PHROG	phrog_14970	NA	unknown function
UHGV-0176677_57	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0176677_57	eggNOG-mapper	397291.C804_03856	double-strand break repair protein	NA
UHGV-0176677_57	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0176677_57	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0176677_57	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0176677_60	PHROG	phrog_27197	NA	unknown function
UHGV-0176677_60	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0176677_60	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0176677_60	Structural annotation	NF007410	NA	NA