UHGV-0176701

Genome information

Genome length 40,694 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176701
vOTU ID	vOTU-010963
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591418
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.08
Jumbo phage	No

Genome content
Genome length	40,694 bps
GC content	62.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.10%
Average CDS length	644.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176701_1	KOfam	K14059	int; integrase	NA
UHGV-0176701_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0176701_1	UniRef90	UniRef90_A0A1X2Z8V5	Phage integrase family protein	NA
UHGV-0176701_1	eggNOG-mapper	1680.BADO_1276	Phage integrase family	NA
UHGV-0176701_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0176701_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176701_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176701_1	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0176701_2	eggNOG-mapper	1435051.BMOU_0749	NA	NA
UHGV-0176701_3	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176701_3	UniRef90	UniRef90_A0A076JN87	DNA-binding protein	NA
UHGV-0176701_3	eggNOG-mapper	196164.23492660	NA	NA
UHGV-0176701_3	Structural annotation	PF01381, NF041951, COG3093	NA	NA
UHGV-0176701_4	eggNOG-mapper	1680.BADO_1273	NA	NA
UHGV-0176701_5	UniRef90	UniRef90_A0A415BYU2	DNA-binding protein	NA
UHGV-0176701_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0176701_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176701_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176701_9	UniRef90	UniRef90_A0A7J5MY19	Single-stranded DNA-binding protein	NA
UHGV-0176701_9	eggNOG-mapper	1435051.BMOU_0255	single-stranded DNA-binding protein	NA
UHGV-0176701_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176701_9	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0176701_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176701_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176701_9	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0176701_10	eggNOG-mapper	1435051.BMOU_0254	NA	NA
UHGV-0176701_11	PHROG	phrog_3926	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176701_11	UniRef90	UniRef90_A0A086ZNU5	Zinc finger protein	NA
UHGV-0176701_11	eggNOG-mapper	401473.BDP_0914	Helix-turn-helix domain	NA
UHGV-0176701_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0176701_12	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0176701_12	UniRef90	UniRef90_A0A2G5PS79	ParB domain-containing protein	NA
UHGV-0176701_12	eggNOG-mapper	1435051.BMOU_0252	ParB-like nuclease domain	NA
UHGV-0176701_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176701_12	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0176701_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0176701_12	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0176701_13	Structural annotation	PF02185, NF012003	NA	NA
UHGV-0176701_14	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176701_14	UniRef90	UniRef90_A0A086ZNU8	Gp77 phage protein	NA
UHGV-0176701_14	eggNOG-mapper	1435051.BMOU_0249	HNH endonuclease	NA
UHGV-0176701_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0176701_15	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0176701_15	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0176701_15	UniRef90	UniRef90_A0A0G9MAU2	Oligoribonuclease	NA
UHGV-0176701_15	eggNOG-mapper	566552.BIFCAT_00884	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0176701_15	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0176701_15	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0176701_19	PHROG	phrog_3641	NA	unknown function
UHGV-0176701_19	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0176701_21	eggNOG-mapper	1680.BADO_1257	NA	NA
UHGV-0176701_21	Structural annotation	PF19885, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0176701_24	PHROG	phrog_774	NA	unknown function
UHGV-0176701_24	UniRef90	UniRef90_A0A087DRP7	NA	NA
UHGV-0176701_24	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0176701_24	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0176701_25	Structural annotation	PF06013, MF_00683, NF035934	NA	NA
UHGV-0176701_26	PHROG	phrog_908	NA	unknown function
UHGV-0176701_26	UniRef90	UniRef90_A0A086ZNV6	PhnA protein	NA
UHGV-0176701_26	eggNOG-mapper	1435051.BMOU_0239	NA	NA
UHGV-0176701_27	PHROG	phrog_226	minor tail protein	tail
UHGV-0176701_27	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0176701_28	PHROG	phrog_8680	NA	unknown function
UHGV-0176701_28	UniRef90	UniRef90_A0A087DRQ2	ParB-like protein	NA
UHGV-0176701_28	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-0176701_28	Pfam	PF14386	NA	DUF4417
UHGV-0176701_28	Structural annotation	PF14386	NA	NA
UHGV-0176701_30	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0176701_30	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0176701_30	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0176701_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176701_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0176701_31	PHROG	phrog_104	portal protein	head and packaging
UHGV-0176701_31	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0176701_31	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176701_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176701_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176701_32	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0176701_32	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0176701_33	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0176701_33	UniRef90	UniRef90_A0A7L6B7M9	NA	NA
UHGV-0176701_33	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0176701_34	PHROG	phrog_212	major head protein	head and packaging
UHGV-0176701_34	UniRef90	UniRef90_A0A430FUD7	Phage capsid protein	NA
UHGV-0176701_34	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0176701_34	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0176701_35	PHROG	phrog_15682	NA	unknown function
UHGV-0176701_35	UniRef90	UniRef90_UPI001C2246A5	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0176701_36	UniRef90	UniRef90_A0A415BYV4	Head protein	NA
UHGV-0176701_37	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0176701_37	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0176701_37	eggNOG-mapper	1172180.KB911804_gene1130	NA	NA
UHGV-0176701_37	Pfam	PF09355	NA	Phage_Gp19
UHGV-0176701_37	Structural annotation	PF09355	NA	NA
UHGV-0176701_38	PHROG	phrog_13779	NA	unknown function
UHGV-0176701_38	UniRef90	UniRef90_A0A1X2YXX1	Phage associated protein	NA
UHGV-0176701_38	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0176701_38	Pfam	PF19586	NA	DUF6093
UHGV-0176701_38	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0176701_39	PHROG	phrog_19109	NA	unknown function
UHGV-0176701_39	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0176701_39	Structural annotation	TIGR01725	NA	NA
UHGV-0176701_40	UniRef90	UniRef90_A0A087DRR4	Transcriptional regulator	NA
UHGV-0176701_40	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0176701_40	Structural annotation	PF06141	NA	NA
UHGV-0176701_41	PHROG	phrog_2491	major tail protein	tail
UHGV-0176701_41	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0176701_41	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0176701_41	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0176701_42	UniRef90	UniRef90_A0A087DRR6	DNAase primase	NA
UHGV-0176701_42	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0176701_42	Structural annotation	PF08890	NA	NA
UHGV-0176701_43	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0176701_44	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0176701_44	UniRef90	UniRef90_A0A087DRR8	Phage tail tape measure protein, TP901 family	NA
UHGV-0176701_44	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0176701_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0176701_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0176701_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0176701_44	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0176701_45	PHROG	phrog_5577	minor tail protein	tail
UHGV-0176701_45	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0176701_45	eggNOG-mapper	1435051.BMOU_0767	NA	NA
UHGV-0176701_45	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0176701_46	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0176701_46	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0176701_46	eggNOG-mapper	1692.BMAGN_1457	NA	NA
UHGV-0176701_46	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0176701_47	PHROG	phrog_1885	minor tail protein	tail
UHGV-0176701_47	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0176701_47	eggNOG-mapper	35760.BCHO_0828	NA	NA
UHGV-0176701_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0176701_48	PHROG	phrog_30068	NA	unknown function
UHGV-0176701_48	eggNOG-mapper	1688.BCUN_1859	domain, Protein	NA
UHGV-0176701_48	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0176701_49	eggNOG-mapper	78346.BRUM_0384	NA	NA
UHGV-0176701_51	PHROG	phrog_28754	NA	unknown function
UHGV-0176701_51	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0176701_51	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0176701_51	Structural annotation	PF18079	NA	NA
UHGV-0176701_52	PHROG	phrog_17147	NA	unknown function
UHGV-0176701_52	UniRef90	UniRef90_A0A0M4N1P7	Unassigned protein	NA
UHGV-0176701_52	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-0176701_52	Structural annotation	PF21430	NA	NA
UHGV-0176701_53	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0176701_53	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0176701_53	UniRef90	UniRef90_E8MT59	Reverse transcriptase domain-containing protein	NA
UHGV-0176701_53	eggNOG-mapper	1680.BADO_1221	reverse transcriptase	NA
UHGV-0176701_53	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0176701_53	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0176701_53	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0176701_53	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0176701_55	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0176701_56	PHROG	phrog_1397	NA	unknown function
UHGV-0176701_56	UniRef90	UniRef90_A0A0G9M8G9	PRTRC system protein E	NA
UHGV-0176701_56	eggNOG-mapper	1680.BADO_1218	NA	NA
UHGV-0176701_58	KOfam	K07273	acm; lysozyme	NA
UHGV-0176701_58	PHROG	phrog_291	endolysin	lysis
UHGV-0176701_58	UniRef90	UniRef90_A0A087D509	Glycosyl hydrolase family 25	NA
UHGV-0176701_58	eggNOG-mapper	78346.BRUM_0377	Glycosyl hydrolases family 25	NA
UHGV-0176701_58	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176701_58	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0176701_58	Pfam	PF01476	LysM domain	LysM
UHGV-0176701_58	COG	COG1388	LysM repeat	NA
UHGV-0176701_58	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0176701_59	PHROG	phrog_881	holin	lysis
UHGV-0176701_59	UniRef90	UniRef90_UPI0019595599	holin	NA
UHGV-0176701_59	eggNOG-mapper	1680.BADO_1216	Putative phage holin Dp-1	NA
UHGV-0176701_59	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0176701_59	Structural annotation	PF16938	NA	NA