UHGV-0176712

Genome information

Genome length 27,537 bps

CDS count 42

Completeness 61.70% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176712
vOTU ID	vOTU-028916
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585278
BioSample	SAMN09781738
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.73
Jumbo phage	No

Genome content
Genome length	27,537 bps
GC content	56.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	88.59%
Average CDS length	582.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176712_1	PHROG	phrog_38832	NA	unknown function
UHGV-0176712_1	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0176712_2	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176712_2	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0176712_2	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0176712_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0176712_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0176712_2	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0176712_5	PHROG	phrog_18750	NA	unknown function
UHGV-0176712_5	eggNOG-mapper	411483.FAEPRAA2165_01872	Cell wall hydrolase	NA
UHGV-0176712_5	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0176712_5	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0176712_7	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0176712_7	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0176712_7	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0176712_7	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0176712_7	Structural annotation	PF16677	NA	NA
UHGV-0176712_8	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0176712_11	PHROG	phrog_6244	NA	unknown function
UHGV-0176712_11	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0176712_12	eggNOG-mapper	1232436.CAPF01000086_gene855	NA	NA
UHGV-0176712_14	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0176712_14	PHROG	phrog_95	integrase	integration and excision
UHGV-0176712_14	UniRef90	UniRef90_UPI00164DD5BB	recombinase family protein	NA
UHGV-0176712_14	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0176712_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0176712_14	Pfam	PF07508	Recombinase	Recombinase
UHGV-0176712_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0176712_14	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0176712_15	PHROG	phrog_26910	NA	unknown function
UHGV-0176712_16	PHROG	phrog_3675	NA	unknown function
UHGV-0176712_16	UniRef90	UniRef90_UPI001D08FCA4	YjcQ family protein	NA
UHGV-0176712_16	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-0176712_16	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0176712_16	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0176712_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0176712_17	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0176712_17	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0176712_17	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0176712_17	COG	COG5410	NA	NA
UHGV-0176712_17	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0176712_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176712_18	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0176712_18	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176712_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176712_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176712_20	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0176712_20	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0176712_20	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0176712_20	Pfam	PF17236	NA	DUF5309
UHGV-0176712_20	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0176712_21	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0176712_21	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0176712_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0176712_21	Structural annotation	TIGR01560	NA	NA
UHGV-0176712_22	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0176712_24	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0176712_25	PHROG	phrog_158	major tail protein	tail
UHGV-0176712_25	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0176712_25	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0176712_25	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0176712_26	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0176712_26	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0176712_26	Pfam	PF16478	NA	DUF5055
UHGV-0176712_26	Structural annotation	PF16478	NA	NA
UHGV-0176712_27	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0176712_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176712_28	UniRef90	UniRef90_A0A3D9GHV1	Phage-related protein	NA
UHGV-0176712_28	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0176712_28	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0176712_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176712_29	PHROG	phrog_1194	NA	unknown function
UHGV-0176712_29	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0176712_30	PHROG	phrog_6616	tail protein	tail
UHGV-0176712_30	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0176712_30	eggNOG-mapper	1232443.BAIA02000078_gene16	NA	NA
UHGV-0176712_30	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0176712_31	UniRef90	UniRef90_A0A2Z4QA20	KID repeat-containing protein	NA
UHGV-0176712_31	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0176712_31	Structural annotation	COG4379	NA	NA
UHGV-0176712_33	eggNOG-mapper	1235797.C816_04177	alginic acid biosynthetic process	NA
UHGV-0176712_33	COG	COG1511	NA	NA
UHGV-0176712_34	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0176712_34	Structural annotation	PF21722	NA	NA
UHGV-0176712_35	eggNOG-mapper	1291050.JAGE01000001_gene436	NA	NA
UHGV-0176712_36	PHROG	phrog_18593	NA	unknown function
UHGV-0176712_36	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0176712_36	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0176712_36	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0176712_36	Structural annotation	PF14600	NA	NA
UHGV-0176712_37	UniRef90	UniRef90_A0A1Q6JHV6	Branched-chain amino acid ABC transporter permease	NA
UHGV-0176712_37	eggNOG-mapper	1235835.C814_01206	NA	NA
UHGV-0176712_38	eggNOG-mapper	515622.bpr_I1251	Peptidase_C39 like family	NA
UHGV-0176712_38	Structural annotation	PF05543, NF033920	NA	NA
UHGV-0176712_39	PHROG	phrog_881	holin	lysis
UHGV-0176712_39	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0176712_39	eggNOG-mapper	1321782.HMPREF1986_02282	Putative phage holin Dp-1	NA
UHGV-0176712_39	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0176712_39	Structural annotation	PF16938	NA	NA
UHGV-0176712_40	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0176712_40	PHROG	phrog_435	endolysin	lysis
UHGV-0176712_40	UniRef90	UniRef90_A0A351MWN4	SPOR domain-containing protein	NA
UHGV-0176712_40	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0176712_40	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0176712_40	Pfam	PF05036	SPOR domain	SPOR
UHGV-0176712_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176712_40	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0176712_41	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA