UHGV-0176770

Genome information

Genome length 42,154 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176770
vOTU ID	vOTU-046597
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_574836
BioSample	SAMN07449017
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	83.67
Jumbo phage	No

Genome content
Genome length	42,154 bps
GC content	41.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.70%
Average CDS length	685.13 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176770_1	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0176770_1	UniRef90	UniRef90_R5BDW9	HTH_59 domain-containing protein	NA
UHGV-0176770_1	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0176770_1	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0176770_1	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0176770_2	PHROG	phrog_10797	NA	unknown function
UHGV-0176770_2	eggNOG-mapper	883156.HMPREF9282_00972	NA	NA
UHGV-0176770_2	Structural annotation	PF06531	NA	NA
UHGV-0176770_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0176770_3	PHROG	phrog_435	endolysin	lysis
UHGV-0176770_3	UniRef90	UniRef90_K9D3K8	MurNAc-LAA domain-containing protein	NA
UHGV-0176770_3	eggNOG-mapper	883156.HMPREF9282_00971	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176770_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0176770_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176770_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0176770_4	PHROG	phrog_199	holin	lysis
UHGV-0176770_4	UniRef90	UniRef90_UPI001D055399	phage holin family protein	NA
UHGV-0176770_4	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-0176770_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0176770_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0176770_6	PHROG	phrog_32639	NA	unknown function
UHGV-0176770_6	eggNOG-mapper	1005058.UMN179_01642	NA	NA
UHGV-0176770_6	Structural annotation	PF21611	NA	NA
UHGV-0176770_7	KOfam	K14059	int; integrase	NA
UHGV-0176770_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0176770_7	UniRef90	UniRef90_A0A6N3FI03	Prophage CPS-53 integrase	NA
UHGV-0176770_7	eggNOG-mapper	883156.HMPREF9282_01261	Phage integrase family	NA
UHGV-0176770_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176770_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0176770_8	PHROG	phrog_6162	tail fiber protein	tail
UHGV-0176770_8	UniRef90	UniRef90_R5BLY9	Side tail fiber protein	NA
UHGV-0176770_8	eggNOG-mapper	883156.HMPREF9282_00967	tail collar domain protein	NA
UHGV-0176770_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0176770_8	Structural annotation	PF12571, NF012201	NA	NA
UHGV-0176770_9	PHROG	phrog_521	tail protein	tail
UHGV-0176770_9	UniRef90	UniRef90_UPI001960081B	NA	NA
UHGV-0176770_9	eggNOG-mapper	883156.HMPREF9282_00966	NA	NA
UHGV-0176770_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0176770_9	COG	COG3778	NA	NA
UHGV-0176770_9	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0176770_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0176770_10	UniRef90	UniRef90_K9D4C7	Baseplate_J domain-containing protein	NA
UHGV-0176770_10	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0176770_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0176770_10	COG	COG3299	NA	NA
UHGV-0176770_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0176770_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0176770_11	UniRef90	UniRef90_UPI00195F4444	NA	NA
UHGV-0176770_11	eggNOG-mapper	883156.HMPREF9282_00964	NA	NA
UHGV-0176770_11	Pfam	PF10934	NA	DUF2634
UHGV-0176770_11	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0176770_12	PHROG	phrog_579	NA	unknown function
UHGV-0176770_12	UniRef90	UniRef90_UPI000DA5FB9A	NA	NA
UHGV-0176770_12	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0176770_12	Pfam	PF10844	NA	DUF2577
UHGV-0176770_12	Structural annotation	PF10844	NA	NA
UHGV-0176770_13	PHROG	phrog_400	tail protein	tail
UHGV-0176770_13	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0176770_13	eggNOG-mapper	883156.HMPREF9282_00962	NLP P60 protein	NA
UHGV-0176770_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0176770_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0176770_14	PHROG	phrog_380	endolysin	lysis
UHGV-0176770_14	UniRef90	UniRef90_W8TF03	Phage-like element PBSX protein XkdP	NA
UHGV-0176770_14	eggNOG-mapper	883156.HMPREF9282_00961	LysM domain	NA
UHGV-0176770_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0176770_14	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0176770_15	PHROG	phrog_16692	NA	unknown function
UHGV-0176770_15	UniRef90	UniRef90_R5BHV6	Phage tail tape measure protein TP901 family core region domain protein	NA
UHGV-0176770_15	eggNOG-mapper	883156.HMPREF9282_00960	Phage-related minor tail protein	NA
UHGV-0176770_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0176770_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0176770_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0176770_15	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0176770_16	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0176770_16	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0176770_16	eggNOG-mapper	883156.HMPREF9282_00959	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0176770_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0176770_16	Structural annotation	PF08890	NA	NA
UHGV-0176770_17	PHROG	phrog_365	tail protein	tail
UHGV-0176770_17	UniRef90	UniRef90_A0A6N3AA23	Phage-like element PBSX protein XkdM	NA
UHGV-0176770_17	eggNOG-mapper	883156.HMPREF9282_00958	Phage tail tube protein	NA
UHGV-0176770_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0176770_17	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0176770_18	PHROG	phrog_1480	tail sheath	tail
UHGV-0176770_18	UniRef90	UniRef90_K9DP62	Phage_sheath_1 domain-containing protein	NA
UHGV-0176770_18	eggNOG-mapper	883156.HMPREF9282_00957	Phage tail sheath C-terminal domain	NA
UHGV-0176770_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0176770_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0176770_19	PHROG	phrog_525	NA	unknown function
UHGV-0176770_19	eggNOG-mapper	883156.HMPREF9282_00956	NA	NA
UHGV-0176770_19	Pfam	PF20765	NA	DUF6838
UHGV-0176770_19	Structural annotation	PF20765	NA	NA
UHGV-0176770_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176770_20	UniRef90	UniRef90_UPI0005EBC23C	HK97 gp10 family phage protein	NA
UHGV-0176770_20	eggNOG-mapper	883156.HMPREF9282_00955	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0176770_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176770_21	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0176770_21	eggNOG-mapper	883156.HMPREF9282_00954	NA	NA
UHGV-0176770_21	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0176770_22	eggNOG-mapper	1111454.HMPREF1250_0188	NA	NA
UHGV-0176770_23	Structural annotation	PF11344	NA	NA
UHGV-0176770_24	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0176770_24	UniRef90	UniRef90_K9D3J1	Phage_Mu_F domain-containing protein	NA
UHGV-0176770_24	eggNOG-mapper	883156.HMPREF9282_00951	Phage Mu protein F like protein	NA
UHGV-0176770_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176770_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0176770_24	COG	COG2369	NA	NA
UHGV-0176770_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176770_25	PHROG	phrog_247	major head protein	head and packaging
UHGV-0176770_25	UniRef90	UniRef90_UPI001D00946D	major capsid protein	NA
UHGV-0176770_25	eggNOG-mapper	883156.HMPREF9282_00950	NA	NA
UHGV-0176770_25	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0176770_25	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0176770_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176770_26	UniRef90	UniRef90_A0A1M4V4J5	Phage minor structural protein GP20	NA
UHGV-0176770_26	eggNOG-mapper	883156.HMPREF9282_00949	Phage minor structural protein GP20	NA
UHGV-0176770_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176770_26	Structural annotation	PF06810	NA	NA
UHGV-0176770_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176770_28	UniRef90	UniRef90_K9DP48	SPP1 family phage portal protein	NA
UHGV-0176770_28	eggNOG-mapper	883156.HMPREF9282_00947	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176770_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176770_28	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0176770_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176770_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176770_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176770_29	UniRef90	UniRef90_K9D3I6	PBSX family phage terminase, large subunit	NA
UHGV-0176770_29	eggNOG-mapper	883156.HMPREF9282_00946	Phage terminase, large subunit	NA
UHGV-0176770_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176770_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176770_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176770_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176770_29	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0176770_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176770_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0176770_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0176770_30	UniRef90	UniRef90_A0A6N3A8E7	Terminase small subunit	NA
UHGV-0176770_30	eggNOG-mapper	883156.HMPREF9282_00945	terminase, small subunit	NA
UHGV-0176770_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0176770_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0176770_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0176770_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176770_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0176770_33	PHROG	phrog_21026	NA	unknown function
UHGV-0176770_34	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0176770_34	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0176770_34	UniRef90	UniRef90_K9D3I2	Helicase ATP-binding domain-containing protein	NA
UHGV-0176770_34	eggNOG-mapper	883156.HMPREF9282_00941	SNF2 family	NA
UHGV-0176770_34	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0176770_34	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0176770_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0176770_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0176770_34	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0176770_35	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176770_35	UniRef90	UniRef90_K9D4A1	VRR-NUC domain-containing protein	NA
UHGV-0176770_35	eggNOG-mapper	546273.VEIDISOL_00705	VRR_NUC	NA
UHGV-0176770_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0176770_35	Structural annotation	PF01974, MF_01490, NF002584	NA	NA
UHGV-0176770_36	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0176770_36	UniRef90	UniRef90_C4FP80	Virulence-associated protein E	NA
UHGV-0176770_36	eggNOG-mapper	883156.HMPREF9282_00939	Virulence-associated protein E	NA
UHGV-0176770_36	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0176770_36	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0176770_36	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0176770_37	PHROG	phrog_16315	NA	unknown function
UHGV-0176770_37	UniRef90	UniRef90_UPI000F8DF173	PcfJ domain-containing protein	NA
UHGV-0176770_37	eggNOG-mapper	883156.HMPREF9282_00938	PcfJ-like protein	NA
UHGV-0176770_37	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0176770_37	Structural annotation	PF14284	NA	NA
UHGV-0176770_39	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0176770_39	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0176770_39	UniRef90	UniRef90_K9D3H9	POLAc domain-containing protein	NA
UHGV-0176770_39	eggNOG-mapper	883156.HMPREF9282_00936	DNA polymerase	NA
UHGV-0176770_39	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0176770_39	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0176770_39	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0176770_40	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176770_40	UniRef90	UniRef90_UPI001F0CBF89	NA	NA
UHGV-0176770_40	eggNOG-mapper	883156.HMPREF9282_00935	NA	NA
UHGV-0176770_40	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0176770_40	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0176770_41	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176770_41	UniRef90	UniRef90_UPI000F8EBC86	NA	NA
UHGV-0176770_41	eggNOG-mapper	883156.HMPREF9282_00934	NA	NA
UHGV-0176770_41	Pfam	PF10926	NA	DUF2800
UHGV-0176770_41	COG	COG2887	RecB family exonuclease	NA
UHGV-0176770_41	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0176770_46	PHROG	phrog_6058	NA	unknown function
UHGV-0176770_46	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0176770_47	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-0176770_47	UniRef90	UniRef90_X8HX74	Winged helix-turn-helix DNA-binding protein	NA
UHGV-0176770_47	eggNOG-mapper	1401067.HMPREF0872_06890	NA	NA
UHGV-0176770_47	Structural annotation	PF04703, MF_00732, NF033788, COG2345	NA	NA
UHGV-0176770_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0176770_52	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0176770_52	UniRef90	UniRef90_UPI000F8DC23A	phage antirepressor KilAC domain-containing protein	NA
UHGV-0176770_52	eggNOG-mapper	883156.HMPREF9282_00923	Phage antirepressor protein	NA
UHGV-0176770_52	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0176770_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0176770_52	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0176770_52	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0176770_53	UniRef90	UniRef90_K9DP25	HTH cro/C1-type domain-containing protein	NA
UHGV-0176770_53	eggNOG-mapper	1262914.BN533_01955	NA	NA
UHGV-0176770_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176770_53	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0176770_54	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0176770_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176770_54	UniRef90	UniRef90_K9D3G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0176770_54	eggNOG-mapper	883156.HMPREF9282_00921	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0176770_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176770_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0176770_54	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176770_55	PHROG	phrog_19315	NA	unknown function
UHGV-0176770_55	UniRef90	UniRef90_K9D482	Peptidase_M78 domain-containing protein	NA
UHGV-0176770_55	eggNOG-mapper	883156.HMPREF9282_00920	NA	NA
UHGV-0176770_55	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0176770_55	Pfam	PF17032	zinc-ribbon family	zinc_ribbon_15
UHGV-0176770_55	COG	COG1592	Rubrerythrin	NA
UHGV-0176770_55	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0176770_56	KOfam	K14059	int; integrase	NA
UHGV-0176770_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0176770_56	UniRef90	UniRef90_K9DK05	Tyr recombinase domain-containing protein	NA
UHGV-0176770_56	eggNOG-mapper	883156.HMPREF9282_00919	Belongs to the 'phage' integrase family	NA
UHGV-0176770_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176770_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176770_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA