UHGV-0176809

Genome information

Genome length 28,284 bps

CDS count 41

Completeness 75.00% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176809
vOTU ID	vOTU-028921
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582594
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.18
Jumbo phage	No

Genome content
Genome length	28,284 bps
GC content	44.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	93.63%
Average CDS length	648.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176809_1	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0176809_1	UniRef90	UniRef90_A0A843HJN2	Phage tail tape measure protein	NA
UHGV-0176809_1	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0176809_1	COG	COG5412	Phage-related protein	NA
UHGV-0176809_1	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0176809_3	PHROG	phrog_88	major tail protein	tail
UHGV-0176809_3	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0176809_3	eggNOG-mapper	66692.ABC1339	phage major tail protein, phi13 family	NA
UHGV-0176809_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0176809_3	COG	COG5492	NA	NA
UHGV-0176809_3	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0176809_4	Structural annotation	PF05657	NA	NA
UHGV-0176809_5	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176809_5	Structural annotation	TIGR01725	NA	NA
UHGV-0176809_6	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0176809_6	eggNOG-mapper	1157490.EL26_20700	NA	NA
UHGV-0176809_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176809_7	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0176809_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176809_8	UniRef90	UniRef90_A0A1M6DQ36	Phage major capsid protein, HK97 family	NA
UHGV-0176809_8	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0176809_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176809_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176809_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0176809_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176809_9	KOfam	K06904	NA	NA
UHGV-0176809_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0176809_9	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-0176809_9	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0176809_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0176809_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0176809_9	COG	COG3740	Phage head maturation protease	NA
UHGV-0176809_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0176809_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176809_10	UniRef90	UniRef90_R7FBP4	HK97 family phage portal protein	NA
UHGV-0176809_10	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0176809_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176809_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176809_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0176809_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176809_11	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0176809_11	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0176809_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0176809_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0176809_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176809_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0176809_12	PHROG	phrog_1066	NA	unknown function
UHGV-0176809_13	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0176809_13	UniRef90	UniRef90_A0A843H3P4	HNH endonuclease	NA
UHGV-0176809_13	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0176809_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0176809_13	Pfam	PF13671	AAA domain	AAA_33
UHGV-0176809_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0176809_13	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0176809_14	PHROG	phrog_18805	NA	unknown function
UHGV-0176809_14	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0176809_14	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0176809_15	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0176809_15	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-0176809_15	eggNOG-mapper	35241.Q9AYX3_BPTU2	endonuclease activity	NA
UHGV-0176809_15	Structural annotation	PF07141	NA	NA
UHGV-0176809_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0176809_16	PHROG	phrog_291	endolysin	lysis
UHGV-0176809_16	UniRef90	UniRef90_R6CHD4	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0176809_16	eggNOG-mapper	1120933.ATUY01000004_gene1004	lysozyme activity	NA
UHGV-0176809_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176809_16	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0176809_16	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0176809_16	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0176809_17	PHROG	phrog_1863	NA	unknown function
UHGV-0176809_17	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0176809_18	UniRef90	UniRef90_A0A843H1D7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0176809_18	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0176809_18	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0176809_18	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0176809_19	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0176809_19	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0176809_19	UniRef90	UniRef90_A0A259V1C2	SF3 helicase domain-containing protein	NA
UHGV-0176809_19	eggNOG-mapper	742740.HMPREF9474_02364	Phage plasmid primase, P4 family	NA
UHGV-0176809_19	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0176809_19	Pfam	PF19263	NA	DUF5906
UHGV-0176809_19	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0176809_19	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0176809_19	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0176809_19	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0176809_20	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0176809_20	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0176809_20	UniRef90	UniRef90_A0A357R6J7	mRNA interferase	NA
UHGV-0176809_20	eggNOG-mapper	1121121.KB894320_gene888	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0176809_20	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0176809_20	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0176809_22	PHROG	phrog_6721	NA	unknown function
UHGV-0176809_22	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0176809_22	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0176809_23	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0176809_23	UniRef90	UniRef90_D7GNT7	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0176809_23	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0176809_23	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0176809_23	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0176809_23	Structural annotation	PF01503, MF_01020, NF001613, COG1694	NA	NA
UHGV-0176809_25	PHROG	phrog_236	nucleotide kinase	other
UHGV-0176809_25	UniRef90	UniRef90_D7GQK6	NA	NA
UHGV-0176809_25	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0176809_25	Pfam	PF11753	NA	DUF3310
UHGV-0176809_25	Structural annotation	PF11753	NA	NA
UHGV-0176809_26	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0176809_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176809_26	UniRef90	UniRef90_A0A4Q5QDA8	XRE family transcriptional regulator (Fragment)	NA
UHGV-0176809_26	eggNOG-mapper	1217720.ALOX01000010_gene2068	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176809_26	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0176809_26	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0176809_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0176809_27	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0176809_27	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0176809_27	UniRef90	UniRef90_UPI0004070520	DNA polymerase	NA
UHGV-0176809_27	eggNOG-mapper	1280692.AUJL01000009_gene2997	DNA polymerase elongation subunit (Family B)	NA
UHGV-0176809_27	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0176809_27	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0176809_28	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176809_28	UniRef90	UniRef90_A0A845R233	NA	NA
UHGV-0176809_28	eggNOG-mapper	445335.CBN_1358	NA	NA
UHGV-0176809_28	Pfam	PF05037	NA	DUF669
UHGV-0176809_28	Structural annotation	PF05037	NA	NA
UHGV-0176809_30	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176809_30	UniRef90	UniRef90_UPI0007C86507	AAA family ATPase	NA
UHGV-0176809_30	eggNOG-mapper	291112.PAU_03566	NA	NA
UHGV-0176809_30	Pfam	PF13479	AAA domain	AAA_24
UHGV-0176809_30	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0176809_31	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0176809_31	UniRef90	UniRef90_A0A1C6EY57	Siphovirus Gp157	NA
UHGV-0176809_31	eggNOG-mapper	397290.C810_05162	Siphovirus Gp157	NA
UHGV-0176809_31	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0176809_31	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0176809_32	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176809_32	UniRef90	UniRef90_A0A415TAD1	VRR-NUC domain-containing protein	NA
UHGV-0176809_32	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-0176809_32	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0176809_32	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0176809_32	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0176809_34	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0176809_34	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0176809_34	UniRef90	UniRef90_A0A1M6S0P4	SNF2 family N-terminal domain-containing protein	NA
UHGV-0176809_34	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0176809_34	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0176809_34	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0176809_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0176809_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0176809_34	Structural annotation	PF16203, MF_01821, NF038318, COG0553	NA	NA
UHGV-0176809_35	Structural annotation	PF08962, PF19881, TIGR00405, COG4481	NA	NA
UHGV-0176809_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0176809_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176809_40	UniRef90	UniRef90_A0A7C9H840	Helix-turn-helix transcriptional regulator	NA
UHGV-0176809_40	eggNOG-mapper	997350.HMPREF9129_1691	PFAM Helix-turn-helix	NA
UHGV-0176809_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0176809_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176809_40	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0176809_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176809_41	PHROG	phrog_1914	NA	unknown function
UHGV-0176809_41	UniRef90	UniRef90_R7FBB0	Putative toxin-antitoxin system toxin component	NA
UHGV-0176809_41	eggNOG-mapper	1292373.H640_05596	Zn peptidase	NA
UHGV-0176809_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0176809_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0176809_41	Structural annotation	PF06114, COG2856	NA	NA