UHGV-0176835

Genome information

Genome length 34,919 bps

CDS count 67

Completeness 63.10% (medium-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176835
vOTU ID	vOTU-028924
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587037
BioSample	SAMN09781787
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.89
Jumbo phage	No

Genome content
Genome length	34,919 bps
GC content	53.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	87.81%
Average CDS length	461.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176835_1	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176835_1	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0176835_1	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-0176835_1	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0176835_4	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0176835_4	eggNOG-mapper	1123405.AUMM01000039_gene153	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0176835_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176835_4	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0176835_4	COG	COG2369	NA	NA
UHGV-0176835_4	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176835_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176835_5	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0176835_5	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176835_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176835_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176835_6	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176835_6	UniRef90	UniRef90_R6H304	AP2 domain-containing protein	NA
UHGV-0176835_6	eggNOG-mapper	397290.C810_05173	NA	NA
UHGV-0176835_7	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0176835_7	UniRef90	UniRef90_UPI001D063AE7	phage terminase large subunit	NA
UHGV-0176835_7	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0176835_7	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0176835_7	COG	COG5410	NA	NA
UHGV-0176835_7	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0176835_9	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0176835_9	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0176835_9	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0176835_9	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-0176835_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0176835_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0176835_9	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0176835_10	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0176835_10	PHROG	phrog_5978	NA	unknown function
UHGV-0176835_10	UniRef90	UniRef90_A0A1V5RLN7	Adenosine monophosphate-protein transferase SoFic	NA
UHGV-0176835_10	eggNOG-mapper	500635.MITSMUL_03290	Fic/DOC family	NA
UHGV-0176835_10	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0176835_10	COG	COG3177	Fic family protein	NA
UHGV-0176835_10	Structural annotation	PF02661, TIGR02613, COG3177	NA	NA
UHGV-0176835_12	UniRef90	UniRef90_UPI0003F951FF	helix-turn-helix transcriptional regulator	NA
UHGV-0176835_12	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0176835_13	UniRef90	UniRef90_UPI001D08C4A6	helix-turn-helix domain-containing protein	NA
UHGV-0176835_13	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-0176835_14	UniRef90	UniRef90_UPI001C02D1DF	winged helix-turn-helix transcriptional regulator	NA
UHGV-0176835_14	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0176835_14	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0176835_15	UniRef90	UniRef90_A0A5P8D6D5	Sequence-specific DNA binding RNA polymerase II transcription factor	NA
UHGV-0176835_17	eggNOG-mapper	547042.BACCOPRO_02355	NA	NA
UHGV-0176835_19	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0176835_19	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0176835_19	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0176835_19	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0176835_20	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0176835_21	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0176835_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176835_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176835_22	UniRef90	UniRef90_A0A316PZZ8	Single-stranded DNA-binding protein	NA
UHGV-0176835_22	eggNOG-mapper	1296662.S5MUT4_9CAUD	Single-strand binding protein family	NA
UHGV-0176835_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176835_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176835_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176835_22	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0176835_23	eggNOG-mapper	991905.SL003B_3762	NA	NA
UHGV-0176835_25	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0176835_25	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0176835_25	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0176835_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0176835_25	Structural annotation	PF04542, MF_02064, NF006147, COG1191	NA	NA
UHGV-0176835_26	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0176835_26	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0176835_26	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0176835_26	eggNOG-mapper	1499689.CCNN01000009_gene2742	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0176835_26	Pfam	PF00692	dUTPase	dUTPase
UHGV-0176835_26	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0176835_26	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0176835_26	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0176835_28	PHROG	phrog_6721	NA	unknown function
UHGV-0176835_28	eggNOG-mapper	411473.RUMCAL_00916	NA	NA
UHGV-0176835_28	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0176835_32	Pfam	PF04448	NA	DUF551
UHGV-0176835_33	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0176835_33	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0176835_33	UniRef90	UniRef90_UPI0018CF8D58	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0176835_33	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0176835_33	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0176835_33	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0176835_34	Structural annotation	NF033716	NA	NA
UHGV-0176835_35	PHROG	phrog_924	NA	unknown function
UHGV-0176835_35	UniRef90	UniRef90_A0A2A6DWW3	NA	NA
UHGV-0176835_35	Pfam	PF04448	NA	DUF551
UHGV-0176835_35	Structural annotation	NF041588	NA	NA
UHGV-0176835_39	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176835_39	eggNOG-mapper	32057.KB217481_gene8515	NA	NA
UHGV-0176835_39	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0176835_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0176835_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0176835_40	UniRef90	UniRef90_A0A1Q6PWP3	DNA helicase	NA
UHGV-0176835_40	eggNOG-mapper	926692.AZYG01000047_gene2664	Replicative DNA helicase	NA
UHGV-0176835_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0176835_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0176835_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176835_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0176835_41	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0176835_41	UniRef90	UniRef90_A0A554J835	Bacteriophage-like protein	NA
UHGV-0176835_41	eggNOG-mapper	1193128.A200_01249	NA	NA
UHGV-0176835_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176835_41	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-0176835_45	PHROG	phrog_4973	NA	unknown function
UHGV-0176835_45	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0176835_45	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0176835_45	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0176835_45	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0176835_46	PHROG	phrog_398	NA	unknown function
UHGV-0176835_46	UniRef90	UniRef90_UPI00137B6F1E	putative HNHc nuclease	NA
UHGV-0176835_46	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0176835_46	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0176835_46	Structural annotation	PF16784	NA	NA
UHGV-0176835_47	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176835_47	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0176835_47	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0176835_47	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0176835_52	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0176835_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0176835_52	UniRef90	UniRef90_A0A098AU96	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	NA
UHGV-0176835_52	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0176835_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0176835_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0176835_52	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0176835_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176835_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176835_54	UniRef90	UniRef90_A0A1H0W5S2	Helix-turn-helix domain-containing protein	NA
UHGV-0176835_54	eggNOG-mapper	1235793.C809_01899	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176835_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176835_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176835_54	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0176835_56	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0176835_56	Structural annotation	PF18789	NA	NA
UHGV-0176835_57	PHROG	phrog_4433	NA	unknown function
UHGV-0176835_57	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0176835_57	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0176835_57	Structural annotation	NF007410	NA	NA
UHGV-0176835_58	Structural annotation	PF05339, TIGR00673, COG1476	NA	NA
UHGV-0176835_62	UniRef90	UniRef90_A0A357NGY1	XRE family transcriptional regulator	NA
UHGV-0176835_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0176835_63	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176835_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176835_63	UniRef90	UniRef90_A0A4D7AS91	XRE family transcriptional regulator	NA
UHGV-0176835_63	eggNOG-mapper	997350.HMPREF9129_1691	PFAM Helix-turn-helix	NA
UHGV-0176835_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176835_63	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0176835_63	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0176835_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176835_64	eggNOG-mapper	1114856.C496_14291	COG0457 FOG TPR repeat	NA
UHGV-0176835_64	Pfam	PF00515	Tetratricopeptide repeat	TPR_1
UHGV-0176835_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176835_66	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0176835_67	KOfam	K14059	int; integrase	NA
UHGV-0176835_67	PHROG	phrog_1	integrase	integration and excision
UHGV-0176835_67	UniRef90	UniRef90_A0A1C6JHT2	Site-specific recombinase XerD	NA
UHGV-0176835_67	eggNOG-mapper	1507.HMPREF0262_00420	Belongs to the 'phage' integrase family	NA
UHGV-0176835_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176835_67	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0176835_67	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA