UHGV-0176849

Genome information

Genome length 31,296 bps

CDS count 38

Completeness 80.89% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176849
vOTU ID	vOTU-028925
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_572070
BioSample	SAMN06348129
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.98
Jumbo phage	No

Genome content
Genome length	31,296 bps
GC content	39.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	94.90%
Average CDS length	785.37 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176849_1	PHROG	phrog_7964	NA	unknown function
UHGV-0176849_1	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-0176849_1	eggNOG-mapper	1261131.lam_661	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0176849_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0176849_1	Structural annotation	NF040481	NA	NA
UHGV-0176849_2	PHROG	phrog_6058	NA	unknown function
UHGV-0176849_2	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0176849_2	eggNOG-mapper	428125.CLOLEP_01347	NA	NA
UHGV-0176849_2	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0176849_6	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0176849_6	UniRef90	UniRef90_UPI00051BA35F	siphovirus Gp157 family protein	NA
UHGV-0176849_6	eggNOG-mapper	33035.JPJF01000122_gene2464	Siphovirus Gp157	NA
UHGV-0176849_6	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0176849_6	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0176849_7	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176849_7	UniRef90	UniRef90_A0A373IL66	Single-stranded DNA-binding protein	NA
UHGV-0176849_7	eggNOG-mapper	33035.JPJF01000122_gene2463	ERF superfamily	NA
UHGV-0176849_7	Pfam	PF04404	ERF superfamily	ERF
UHGV-0176849_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176849_7	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0176849_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176849_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176849_8	UniRef90	UniRef90_A0A7X2P517	Single-stranded DNA-binding protein	NA
UHGV-0176849_8	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-0176849_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176849_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176849_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176849_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176849_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0176849_9	PHROG	phrog_11769	NA	unknown function
UHGV-0176849_9	UniRef90	UniRef90_UPI001177D7CA	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0176849_9	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0176849_9	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0176849_9	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0176849_9	Structural annotation	PF09681, PF07261, TIGR01714, COG3935	NA	NA
UHGV-0176849_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0176849_10	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0176849_10	UniRef90	UniRef90_UPI001A9A61ED	DNA cytosine methyltransferase	NA
UHGV-0176849_10	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0176849_10	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0176849_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0176849_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0176849_10	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0176849_12	PHROG	phrog_19011	NA	unknown function
UHGV-0176849_12	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0176849_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176849_13	UniRef90	UniRef90_UPI001C0ED9E5	NA	NA
UHGV-0176849_14	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0176849_14	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0176849_14	UniRef90	UniRef90_UPI001C0332B0	terminase small subunit	NA
UHGV-0176849_14	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0176849_14	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0176849_14	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0176849_14	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0176849_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176849_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0176849_15	UniRef90	UniRef90_UPI001C02BD5C	terminase	NA
UHGV-0176849_15	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0176849_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176849_15	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0176849_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176849_16	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0176849_16	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0176849_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176849_17	PHROG	phrog_25639	NA	unknown function
UHGV-0176849_17	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0176849_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176849_18	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-0176849_18	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0176849_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176849_18	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0176849_18	Structural annotation	PF06152	NA	NA
UHGV-0176849_20	PHROG	phrog_13199	NA	unknown function
UHGV-0176849_20	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0176849_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0176849_21	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0176849_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0176849_22	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0176849_22	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0176849_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176849_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176849_23	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0176849_24	PHROG	phrog_8710	NA	unknown function
UHGV-0176849_24	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0176849_24	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0176849_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176849_25	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0176849_26	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0176849_26	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0176849_26	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0176849_26	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0176849_26	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0176849_27	PHROG	phrog_820	major tail protein	tail
UHGV-0176849_27	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0176849_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0176849_28	PHROG	phrog_8300	NA	unknown function
UHGV-0176849_28	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0176849_28	Structural annotation	PF06854	NA	NA
UHGV-0176849_29	PHROG	phrog_8355	NA	unknown function
UHGV-0176849_29	UniRef90	UniRef90_UPI000E5D9789	Gp15 family bacteriophage protein	NA
UHGV-0176849_29	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0176849_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176849_29	Structural annotation	PF06854	NA	NA
UHGV-0176849_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176849_30	UniRef90	UniRef90_A0A2Y9BKW0	Phage-related protein	NA
UHGV-0176849_30	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0176849_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176849_30	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0176849_31	PHROG	phrog_1194	NA	unknown function
UHGV-0176849_31	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0176849_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0176849_32	PHROG	phrog_6616	tail protein	tail
UHGV-0176849_32	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0176849_32	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0176849_32	COG	COG4926	Phage-related protein	NA
UHGV-0176849_32	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0176849_35	PHROG	phrog_14959	NA	unknown function
UHGV-0176849_35	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0176849_36	PHROG	phrog_14959	NA	unknown function
UHGV-0176849_36	UniRef90	UniRef90_UPI001D0995C2	NA	NA
UHGV-0176849_36	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0176849_37	PHROG	phrog_199	holin	lysis
UHGV-0176849_37	UniRef90	UniRef90_A0A2Y9BGF6	Toxin secretion/phage lysis holin	NA
UHGV-0176849_37	eggNOG-mapper	1232449.BAHV02000008_gene653	Bacteriophage holin family	NA
UHGV-0176849_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0176849_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0176849_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0176849_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0176849_38	PHROG	phrog_14030	NA	unknown function
UHGV-0176849_38	UniRef90	UniRef90_UPI0018972B9E	peptidoglycan-binding protein	NA
UHGV-0176849_38	eggNOG-mapper	457412.RSAG_02810	NlpC/P60 family	NA
UHGV-0176849_38	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0176849_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0176849_38	Structural annotation	PF05382, PF01471, NF033742, NF038080, COG3409, COG0791	NA	NA