UHGV-0176880

Genome information

Genome length 20,880 bps

CDS count 26

Completeness 51.58% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176880
vOTU ID	vOTU-028929
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587729
BioSample	SAMN09781721
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.73
Jumbo phage	No

Genome content
Genome length	20,880 bps
GC content	53.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	95.36%
Average CDS length	772.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176880_1	PHROG	phrog_13845	NA	unknown function
UHGV-0176880_1	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-0176880_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0176880_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0176880_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176880_2	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0176880_2	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0176880_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0176880_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176880_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0176880_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176880_3	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0176880_3	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0176880_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176880_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0176880_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176880_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0176880_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0176880_4	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-0176880_4	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-0176880_4	eggNOG-mapper	1121866.AUGK01000006_gene879	Clp protease	NA
UHGV-0176880_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0176880_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0176880_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0176880_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176880_5	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0176880_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0176880_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176880_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0176880_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176880_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0176880_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176880_6	PHROG	phrog_749	NA	unknown function
UHGV-0176880_6	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0176880_6	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0176880_7	PHROG	phrog_19734	NA	unknown function
UHGV-0176880_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0176880_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176880_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0176880_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0176880_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176880_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0176880_9	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0176880_9	Structural annotation	TIGR01725	NA	NA
UHGV-0176880_10	PHROG	phrog_88	major tail protein	tail
UHGV-0176880_10	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0176880_10	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0176880_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0176880_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0176880_13	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0176880_13	UniRef90	UniRef90_A0A2A7B6K1	TMP_3 domain-containing protein	NA
UHGV-0176880_13	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0176880_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0176880_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0176880_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0176880_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0176880_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176880_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0176880_14	eggNOG-mapper	1123315.AUIP01000014_gene1961	tail component	NA
UHGV-0176880_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176880_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0176880_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0176880_15	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0176880_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0176880_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176880_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0176880_15	COG	COG4926	Phage-related protein	NA
UHGV-0176880_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0176880_17	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0176880_17	PHROG	phrog_7158	NA	unknown function
UHGV-0176880_17	UniRef90	UniRef90_UPI000CF6BF4A	metallophosphoesterase	NA
UHGV-0176880_17	eggNOG-mapper	862514.HMPREF0623_0302	Calcineurin-like phosphoesterase	NA
UHGV-0176880_17	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0176880_17	Structural annotation	PF14582, MF_00905, NF008359, COG5555	NA	NA
UHGV-0176880_18	KOfam	K07273	acm; lysozyme	NA
UHGV-0176880_18	PHROG	phrog_291	endolysin	lysis
UHGV-0176880_18	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0176880_18	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0176880_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176880_18	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0176880_18	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0176880_20	PHROG	phrog_15303	NA	unknown function
UHGV-0176880_23	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0176880_23	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0176880_23	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0176880_24	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA